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The map label for this gene is psd

Identifier: 126208871

GI number: 126208871

Start: 1607975

End: 1608868

Strand: Direct

Name: psd

Synonym: APL_1407

Alternate gene names: 126208871

Gene position: 1607975-1608868 (Clockwise)

Preceding gene: 126208870

Following gene: 126208872

Centisome position: 70.7

GC content: 43.51

Gene sequence:

>894_bases
ATGTCTTTAAAGCCATACGCTACTCCGACTTATTGGCAACGAGTGAAAGTCGCATTTCAATATATCTTCCCGCAATTACC
CGTTACGCGCTTAGCCGGCTGGCTGGCAGAACAAAAATGGGGCGCAGTAACTCACTTTATTATTCGTACATTTGCTAAAC
AATATAAAGTGAACTTATCGGAGGCGCAAAAAAGCAACGCTTCGGACTATGCAACTTTTAACGAATTCTTTATTCGTCCG
CTAAAAGAAAACGCTCGTCCGATCAATCAAGACGCACAAGCACTTTGCTTACCGGCAGACGGTAAAGTAAGCGAATCGGG
CAAAATTGAAGACGATCGTTTACTGCAAGCTAAAGGTCATTTTTTCACGCTTGAGACTTTATTAGCGAACGATCAAGAAA
TGGCAAATAAATTTAAAGACGGTCATTTTATTACCACTTATTTATCGCCGCGCGATTACCACCGCGTACATATGCCATGC
GATGCAACGTTACGTAAAATGATTTACGTACCGGGCGAATTGTTCTCGGTCAATCCGTTCTTAGCCGAACACGTGCCGAA
TTTATTTGCACGTAACGAACGTGTGATTTGTGAATTTGAAACCGAATTCGGACCGATGGTACAAATTCTGGTCGGCGCAA
CAATTACCGCAAGTATGAGTACGGTTTGGGCAGGTATCATTAACCCTCCTCGTACGAAAGAGGTAGTAGAATATCACTAT
GAAACCAGCGGCGAAACCGCCGTACACCTGAAAAAAGGTCAGGAAATGGGTGCTTTCCGTTTAGGTTCAACCGTAATTAA
CCTCTTCCCGAAAGATAGTGTTGAATTCGAAGCTCACTTACAAGCCGGCGTAGAAACCCGAATGGGTGAACGTTTGGCGA
AAATTGTCAAATAA

Upstream 100 bases:

>100_bases
TCGTTCGGCTCAGTCCCTTCTATAACTATTAGGTAATTCACTTTTCTTTCTGTTATACTTCGCGCCTATTTCTGTAATTG
AATAAAAAGGATACAACCTA

Downstream 100 bases:

>100_bases
TTATCTTCTAGCTAAAAAAGCACGATTCTGGTAATCGTGCTCTTTTATAACCAAATCATCTACCACCTTATCAATCGGCT
ATAAAACCAATCAAAAAAGT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 296

Protein sequence:

>297_residues
MSLKPYATPTYWQRVKVAFQYIFPQLPVTRLAGWLAEQKWGAVTHFIIRTFAKQYKVNLSEAQKSNASDYATFNEFFIRP
LKENARPINQDAQALCLPADGKVSESGKIEDDRLLQAKGHFFTLETLLANDQEMANKFKDGHFITTYLSPRDYHRVHMPC
DATLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFETEFGPMVQILVGATITASMSTVWAGIINPPRTKEVVEYHY
ETSGETAVHLKKGQEMGAFRLGSTVINLFPKDSVEFEAHLQAGVETRMGERLAKIVK

Sequences:

>Translated_297_residues
MSLKPYATPTYWQRVKVAFQYIFPQLPVTRLAGWLAEQKWGAVTHFIIRTFAKQYKVNLSEAQKSNASDYATFNEFFIRP
LKENARPINQDAQALCLPADGKVSESGKIEDDRLLQAKGHFFTLETLLANDQEMANKFKDGHFITTYLSPRDYHRVHMPC
DATLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFETEFGPMVQILVGATITASMSTVWAGIINPPRTKEVVEYHY
ETSGETAVHLKKGQEMGAFRLGSTVINLFPKDSVEFEAHLQAGVETRMGERLAKIVK
>Mature_296_residues
SLKPYATPTYWQRVKVAFQYIFPQLPVTRLAGWLAEQKWGAVTHFIIRTFAKQYKVNLSEAQKSNASDYATFNEFFIRPL
KENARPINQDAQALCLPADGKVSESGKIEDDRLLQAKGHFFTLETLLANDQEMANKFKDGHFITTYLSPRDYHRVHMPCD
ATLRKMIYVPGELFSVNPFLAEHVPNLFARNERVICEFETEFGPMVQILVGATITASMSTVWAGIINPPRTKEVVEYHYE
TSGETAVHLKKGQEMGAFRLGSTVINLFPKDSVEFEAHLQAGVETRMGERLAKIVK

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily

Homologues:

Organism=Homo sapiens, GI13489112, Length=310, Percent_Identity=28.7096774193548, Blast_Score=117, Evalue=2e-26,
Organism=Escherichia coli, GI1790604, Length=279, Percent_Identity=56.6308243727599, Blast_Score=336, Evalue=1e-93,
Organism=Caenorhabditis elegans, GI71980843, Length=286, Percent_Identity=29.7202797202797, Blast_Score=122, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI71980840, Length=287, Percent_Identity=29.616724738676, Blast_Score=122, Evalue=3e-28,
Organism=Saccharomyces cerevisiae, GI6321609, Length=251, Percent_Identity=30.2788844621514, Blast_Score=108, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6324160, Length=164, Percent_Identity=34.1463414634146, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24649526, Length=312, Percent_Identity=33.974358974359, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24649528, Length=312, Percent_Identity=33.974358974359, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24649524, Length=312, Percent_Identity=33.974358974359, Blast_Score=123, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSD_ACTP2 (A3N255)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001054096.1
- STRING:   A3N255
- GeneID:   4849559
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_1407
- eggNOG:   COG0688
- HOGENOM:   HBG302256
- OMA:   MATVWHG
- PhylomeDB:   A3N255
- ProtClustDB:   PRK00044
- BioCyc:   APLE416269:APL_1407-MONOMER
- HAMAP:   MF_00662
- InterPro:   IPR003817
- InterPro:   IPR005221
- PANTHER:   PTHR10067
- TIGRFAMs:   TIGR00163

Pfam domain/function: PF02666 PS_Dcarbxylase

EC number: =4.1.1.65

Molecular weight: Translated: 33753; Mature: 33622

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKPYATPTYWQRVKVAFQYIFPQLPVTRLAGWLAEQKWGAVTHFIIRTFAKQYKVNLS
CCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EAQKSNASDYATFNEFFIRPLKENARPINQDAQALCLPADGKVSESGKIEDDRLLQAKGH
HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCHHHEEECCCC
FFTLETLLANDQEMANKFKDGHFITTYLSPRDYHRVHMPCDATLRKMIYVPGELFSVNPF
EEEEHHHHCCCHHHHHHCCCCCEEEEEECCCCCCEEECCHHHHHHHHEECCCCCEECCHH
LAEHVPNLFARNERVICEFETEFGPMVQILVGATITASMSTVWAGIINPPRTKEVVEYHY
HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
ETSGETAVHLKKGQEMGAFRLGSTVINLFPKDSVEFEAHLQAGVETRMGERLAKIVK
CCCCCEEEEEECCCCCCHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SLKPYATPTYWQRVKVAFQYIFPQLPVTRLAGWLAEQKWGAVTHFIIRTFAKQYKVNLS
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
EAQKSNASDYATFNEFFIRPLKENARPINQDAQALCLPADGKVSESGKIEDDRLLQAKGH
HHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCHHHEEECCCC
FFTLETLLANDQEMANKFKDGHFITTYLSPRDYHRVHMPCDATLRKMIYVPGELFSVNPF
EEEEHHHHCCCHHHHHHCCCCCEEEEEECCCCCCEEECCHHHHHHHHEECCCCCEECCHH
LAEHVPNLFARNERVICEFETEFGPMVQILVGATITASMSTVWAGIINPPRTKEVVEYHY
HHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHH
ETSGETAVHLKKGQEMGAFRLGSTVINLFPKDSVEFEAHLQAGVETRMGERLAKIVK
CCCCCEEEEEECCCCCCHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA