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The map label for this gene is rfaF [H]

Identifier: 126208867

GI number: 126208867

Start: 1604143

End: 1605180

Strand: Reverse

Name: rfaF [H]

Synonym: APL_1403

Alternate gene names: 126208867

Gene position: 1605180-1604143 (Counterclockwise)

Preceding gene: 126208868

Following gene: 126208866

Centisome position: 70.57

GC content: 45.86

Gene sequence:

>1038_bases
ATGAATATCTTAATTATTGGCCCGTCTTGGGTCGGCGATATGATGATGTCGCACGCACTGTACCAACAACTCAAAATTCA
ATATCCGAATTGTCACATTGACGTGATGGCACCGGATTGGTGTCGTCCGCTGCTTGCTCGAATGCCTGAAGTACGCAAAG
CGATTTCGATGCCGATTGGGCATGGTTCGTTCCGCTTATGTGAGCGTTATCAGTTAGGAAAATCGTTAAAAAATCAATAT
GATATGGCGATTGTGTTACCTAATTCGCTTAAATCTGCATTTATTCCGCTATTTGCTAAAATTGCGGTGCGCCGCGGCTG
GAAAGGCGAAAGTCGCTATTTCTTGTTAAACGATTTGCGTAATAACAAGCAAGATTACCCGATGATGGTGCAACGTTATG
TTGCGCTGGCTTTTGAGAAAAATGCCGTGCCGGATGCCAAAGCATTGCCGATGCCTGTACCTTATCTACAAACGCAAGTG
GCTGAGATCAGTGCGACCAAAGCGAAATTTGCCAAACAGTTTGAATATGCCGAACAGCGTCCGGCAATCGGCTTCTGCCC
GGGAGCGGAATTCGGGCCGGCAAAACGTTGGCCGCATTATCATTATGCGAAATTAGCGAAAATGCTAATCGAAAAAGGTT
ATGCGGTACATTTGTTCGGCTCTAATAAAGATAAAGAAGTCGGCGAGCAAATTCGTGCAAGTTTAGCGGCCGATTTACAA
CGCTACTGCGTTAATTTAGCGGGGCAAACCGATTTAAATCAAGCGGTTGATTTAATTGCCGATTGTCGTGCGGTAGTCAG
TAATGACTCCGGGCTAATGCACATTGCTGCCGCATTAGGCAAACCGTTAGTTGCGCTTTACGGGCCAACCAGCCCGCAAT
ATACGCCGCCGCTTTCCGATAAAGCGGTGATTATTCGTTTAATTGAAGGCGGTTTAATTAAAGTTCGTAAAGGCGAAGCC
GCCGAGGGCTATCATCAAAGCTTAATCGATATTCAGCCGGAAATGGTAATTGAGAAACTAGACGCGTTATTAGGCTAA

Upstream 100 bases:

>100_bases
CGACTGTAAAGCCAAATAACGATAAGCGGTTAAATTTACTTAGATTTTTGCAAGTTTCTAGGTAAAAATGACCGCTTGTT
ATTTTAGGGAAAAGGATTTA

Downstream 100 bases:

>100_bases
TTGCAAGCGGTCATTTTTTGCAAAAATTTTGCAGATTTCGACCGCTTGTTCGTATTCATTATGAAAGATAAAGAAATGAA
AGTTTTAGTGGTAAAAACGT

Product: ADP-heptose:LPS heptosyltransferase II

Products: NA

Alternate protein names: ADP-heptose--LPS heptosyltransferase II [H]

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MNILIIGPSWVGDMMMSHALYQQLKIQYPNCHIDVMAPDWCRPLLARMPEVRKAISMPIGHGSFRLCERYQLGKSLKNQY
DMAIVLPNSLKSAFIPLFAKIAVRRGWKGESRYFLLNDLRNNKQDYPMMVQRYVALAFEKNAVPDAKALPMPVPYLQTQV
AEISATKAKFAKQFEYAEQRPAIGFCPGAEFGPAKRWPHYHYAKLAKMLIEKGYAVHLFGSNKDKEVGEQIRASLAADLQ
RYCVNLAGQTDLNQAVDLIADCRAVVSNDSGLMHIAAALGKPLVALYGPTSPQYTPPLSDKAVIIRLIEGGLIKVRKGEA
AEGYHQSLIDIQPEMVIEKLDALLG

Sequences:

>Translated_345_residues
MNILIIGPSWVGDMMMSHALYQQLKIQYPNCHIDVMAPDWCRPLLARMPEVRKAISMPIGHGSFRLCERYQLGKSLKNQY
DMAIVLPNSLKSAFIPLFAKIAVRRGWKGESRYFLLNDLRNNKQDYPMMVQRYVALAFEKNAVPDAKALPMPVPYLQTQV
AEISATKAKFAKQFEYAEQRPAIGFCPGAEFGPAKRWPHYHYAKLAKMLIEKGYAVHLFGSNKDKEVGEQIRASLAADLQ
RYCVNLAGQTDLNQAVDLIADCRAVVSNDSGLMHIAAALGKPLVALYGPTSPQYTPPLSDKAVIIRLIEGGLIKVRKGEA
AEGYHQSLIDIQPEMVIEKLDALLG
>Mature_345_residues
MNILIIGPSWVGDMMMSHALYQQLKIQYPNCHIDVMAPDWCRPLLARMPEVRKAISMPIGHGSFRLCERYQLGKSLKNQY
DMAIVLPNSLKSAFIPLFAKIAVRRGWKGESRYFLLNDLRNNKQDYPMMVQRYVALAFEKNAVPDAKALPMPVPYLQTQV
AEISATKAKFAKQFEYAEQRPAIGFCPGAEFGPAKRWPHYHYAKLAKMLIEKGYAVHLFGSNKDKEVGEQIRASLAADLQ
RYCVNLAGQTDLNQAVDLIADCRAVVSNDSGLMHIAAALGKPLVALYGPTSPQYTPPLSDKAVIIRLIEGGLIKVRKGEA
AEGYHQSLIDIQPEMVIEKLDALLG

Specific function: Lipopolysaccharide core biosynthesis. [C]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790050, Length=346, Percent_Identity=61.849710982659, Blast_Score=435, Evalue=1e-123,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011910 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 38532; Mature: 38532

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILIIGPSWVGDMMMSHALYQQLKIQYPNCHIDVMAPDWCRPLLARMPEVRKAISMPIG
CEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHHHCCCCC
HGSFRLCERYQLGKSLKNQYDMAIVLPNSLKSAFIPLFAKIAVRRGWKGESRYFLLNDLR
CCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHC
NNKQDYPMMVQRYVALAFEKNAVPDAKALPMPVPYLQTQVAEISATKAKFAKQFEYAEQR
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PAIGFCPGAEFGPAKRWPHYHYAKLAKMLIEKGYAVHLFGSNKDKEVGEQIRASLAADLQ
CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHH
RYCVNLAGQTDLNQAVDLIADCRAVVSNDSGLMHIAAALGKPLVALYGPTSPQYTPPLSD
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCC
KAVIIRLIEGGLIKVRKGEAAEGYHQSLIDIQPEMVIEKLDALLG
CCEEEEEECCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNILIIGPSWVGDMMMSHALYQQLKIQYPNCHIDVMAPDWCRPLLARMPEVRKAISMPIG
CEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCHHHHHHHCCCCC
HGSFRLCERYQLGKSLKNQYDMAIVLPNSLKSAFIPLFAKIAVRRGWKGESRYFLLNDLR
CCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHC
NNKQDYPMMVQRYVALAFEKNAVPDAKALPMPVPYLQTQVAEISATKAKFAKQFEYAEQR
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PAIGFCPGAEFGPAKRWPHYHYAKLAKMLIEKGYAVHLFGSNKDKEVGEQIRASLAADLQ
CCCEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHH
RYCVNLAGQTDLNQAVDLIADCRAVVSNDSGLMHIAAALGKPLVALYGPTSPQYTPPLSD
HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCC
KAVIIRLIEGGLIKVRKGEAAEGYHQSLIDIQPEMVIEKLDALLG
CCEEEEEECCCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]