Click here to switch to the map view.

The map label for this gene is rfaC [H]

Identifier: 126208866

GI number: 126208866

Start: 1603108

End: 1604067

Strand: Reverse

Name: rfaC [H]

Synonym: APL_1402

Alternate gene names: 126208866

Gene position: 1604067-1603108 (Counterclockwise)

Preceding gene: 126208867

Following gene: 126208865

Centisome position: 70.52

GC content: 44.38

Gene sequence:

>960_bases
ATGAAAGTTTTAGTGGTAAAAACGTCCTCGATGGGGGATGTGATTCATACTTTACCGGCATTAACGGATGCTAAAAATGC
GATTTCGAATATCCAATTCGATTGGGTGGTGGAAGAAAATTTTAGTGAAATTCCGCATTGGCATTCGGCGGTAGATAAGG
TTATCCCGTTAGCGATTCGCCGTTGGCGTAAGAACCTGTGTAAACGCCAAACTTGGCTGGAATGGCAGCATTATCTAAAG
CAACTTCGCTCGAAAGAATATGATGTGGTGATTGATGCGCAAGGCTTGATTAAAAGTGCGGTATTGGTAACCAAGCAGGC
AAAGGGAACGAGATATGGCTACGATAAACATTCGGCACGAGAGGGACTAAGTAGCTTGTTTTATGATCACGCGTTTAATA
TTGCTTATCAGCAACACGCCGTGGAACGGATTCGCAAGTTATTTGCTAACGCTCTGAATTATCCGCTTCCCGATGAATTG
GGCGATTATGGCATTGCTCCTCATTTTACAAAAAAATCCGAAAATTCCACCGCTTACTTACTTGCGATTCATGCGACAAC
TCGAGCGGATAAACATTGGAAAGAAGAGTATTGGCGAGAAGTGATTCAGGAATTAAGCGTACAAGGCGTTGAAGTCCGCT
TGCCATGGGGAAATGCACAAGAGAAAGCTCGCGCGATACGTTTGGCGCAAGCGAATACCAATGTGACGGTATTACCGAAA
TTATCACTGACCGAATTAGCCGAGCAAATTGCCGGTGCGAAGGCCGTATTGTCGGTTGATACCGGACTAAGTCACTTAGC
GGCGGCATTGGATAAGCCAAACGTAATTTTATACGGTGCAACCGACCCGAAATTAATCGGCGCTTACGGCAAAAATCAGC
ATTATTTAACCGGACACGGTATGGCGAATATTTTACCTTATCGCGTCTTGCAAACCTTAGAAACATTGATCACGGAATAA

Upstream 100 bases:

>100_bases
GAAACTAGACGCGTTATTAGGCTAATTGCAAGCGGTCATTTTTTGCAAAAATTTTGCAGATTTCGACCGCTTGTTCGTAT
TCATTATGAAAGATAAAGAA

Downstream 100 bases:

>100_bases
TCAATTTATCCCTTGTCGGATGCTTGACTTTTACTCCGTATAACACTAGAATTTACTGTCCTTTCGTCTTTGAAAGGATA
TTTTTTAATTTTATTTTTAT

Product: ADP-heptose:LPS heptosyl transferase I

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MKVLVVKTSSMGDVIHTLPALTDAKNAISNIQFDWVVEENFSEIPHWHSAVDKVIPLAIRRWRKNLCKRQTWLEWQHYLK
QLRSKEYDVVIDAQGLIKSAVLVTKQAKGTRYGYDKHSAREGLSSLFYDHAFNIAYQQHAVERIRKLFANALNYPLPDEL
GDYGIAPHFTKKSENSTAYLLAIHATTRADKHWKEEYWREVIQELSVQGVEVRLPWGNAQEKARAIRLAQANTNVTVLPK
LSLTELAEQIAGAKAVLSVDTGLSHLAAALDKPNVILYGATDPKLIGAYGKNQHYLTGHGMANILPYRVLQTLETLITE

Sequences:

>Translated_319_residues
MKVLVVKTSSMGDVIHTLPALTDAKNAISNIQFDWVVEENFSEIPHWHSAVDKVIPLAIRRWRKNLCKRQTWLEWQHYLK
QLRSKEYDVVIDAQGLIKSAVLVTKQAKGTRYGYDKHSAREGLSSLFYDHAFNIAYQQHAVERIRKLFANALNYPLPDEL
GDYGIAPHFTKKSENSTAYLLAIHATTRADKHWKEEYWREVIQELSVQGVEVRLPWGNAQEKARAIRLAQANTNVTVLPK
LSLTELAEQIAGAKAVLSVDTGLSHLAAALDKPNVILYGATDPKLIGAYGKNQHYLTGHGMANILPYRVLQTLETLITE
>Mature_319_residues
MKVLVVKTSSMGDVIHTLPALTDAKNAISNIQFDWVVEENFSEIPHWHSAVDKVIPLAIRRWRKNLCKRQTWLEWQHYLK
QLRSKEYDVVIDAQGLIKSAVLVTKQAKGTRYGYDKHSAREGLSSLFYDHAFNIAYQQHAVERIRKLFANALNYPLPDEL
GDYGIAPHFTKKSENSTAYLLAIHATTRADKHWKEEYWREVIQELSVQGVEVRLPWGNAQEKARAIRLAQANTNVTVLPK
LSLTELAEQIAGAKAVLSVDTGLSHLAAALDKPNVILYGATDPKLIGAYGKNQHYLTGHGMANILPYRVLQTLETLITE

Specific function: Heptose transfer to the lipopolysaccharide core. It transfers the innnermost heptose to [4'-P](3-deoxy-D-manno- octulosonic acid)2-IVA [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790051, Length=319, Percent_Identity=54.858934169279, Blast_Score=347, Evalue=8e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011908 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 36046; Mature: 36046

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLVVKTSSMGDVIHTLPALTDAKNAISNIQFDWVVEENFSEIPHWHSAVDKVIPLAIR
CEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCHHHHHHHHHHHHHHH
RWRKNLCKRQTWLEWQHYLKQLRSKEYDVVIDAQGLIKSAVLVTKQAKGTRYGYDKHSAR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHH
EGLSSLFYDHAFNIAYQQHAVERIRKLFANALNYPLPDELGDYGIAPHFTKKSENSTAYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCEEEE
LAIHATTRADKHWKEEYWREVIQELSVQGVEVRLPWGNAQEKARAIRLAQANTNVTVLPK
EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHEECCCCEEEEEC
LSLTELAEQIAGAKAVLSVDTGLSHLAAALDKPNVILYGATDPKLIGAYGKNQHYLTGHG
CHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCEEECCC
MANILPYRVLQTLETLITE
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVLVVKTSSMGDVIHTLPALTDAKNAISNIQFDWVVEENFSEIPHWHSAVDKVIPLAIR
CEEEEEECCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHCCHHHHHHHHHHHHHHH
RWRKNLCKRQTWLEWQHYLKQLRSKEYDVVIDAQGLIKSAVLVTKQAKGTRYGYDKHSAR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHCCCCCCCCCCCHHHHH
EGLSSLFYDHAFNIAYQQHAVERIRKLFANALNYPLPDELGDYGIAPHFTKKSENSTAYL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCEEEE
LAIHATTRADKHWKEEYWREVIQELSVQGVEVRLPWGNAQEKARAIRLAQANTNVTVLPK
EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHEECCCCEEEEEC
LSLTELAEQIAGAKAVLSVDTGLSHLAAALDKPNVILYGATDPKLIGAYGKNQHYLTGHG
CHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCEEECCC
MANILPYRVLQTLETLITE
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8478319; 8041620; 9278503; 1624462 [H]