Click here to switch to the map view.

The map label for this gene is ccmF [H]

Identifier: 126208831

GI number: 126208831

Start: 1564521

End: 1566470

Strand: Reverse

Name: ccmF [H]

Synonym: APL_1367

Alternate gene names: 126208831

Gene position: 1566470-1564521 (Counterclockwise)

Preceding gene: 126208832

Following gene: 126208830

Centisome position: 68.87

GC content: 43.18

Gene sequence:

>1950_bases
ATGGTTGCGGAATTAGGTAATTACGCATTGGCACTTGCGTTCGGATTGTCAATTTTTTTGGCAATTTTACCGCTTGTTGG
TGCACAAAAACAGAATAGTACTCTTATGGCGTTAGCTCGTCCGATAACATGGGCAATGTTTTTAGCATTAACGATTTCAT
TCGGTTCGCTTTTTTATCTGTTTGCGGTAAATGACTTCAGCGTGCAATACGTAGTGAATAACTCCAACTCAACATTACCT
ATCCAATATCGTCTTTCTGCGGTTTGGGGATCGCACGAAGGATCAATGCTGTTATGGGTTTGGTTGCTTTCGCTTTGGTC
TATCGCTGTGGCGGCATTTTCTCGCCAGATGCCGGAAGAAGCCGTTTCGCGCGTATTGAGTGTAATGGGATTAATCAGTA
TCGGATTTTTGGTTTTCTTAATCTTTAGTTCAAATCCGTTTAAACGTACTTTCCCCGATTTTCCTGCGGACGGTCGAGAA
TTAAATCCGATGTTGCAAGATGTCGGACTGATTTTCCATCCGCCGTTATTATATATGGGATATGTCGGTTTCTCGGTGGC
ATTTGCGTTCGCGATTGCTTCACTAATGACCGGAAGATTGGATACCGCTTGGGCTCGTTGGTCTCGTCCTTGGACAATGG
CGGCTTGGGTATTTTTAACACTTGGTATCGTACTCGGTTCGTGGTGGGCTTATTACGAATTAGGCTGGGGAGGCTGGTGG
TTCTGGGATCCGGTTGAAAATGCTTCGTTAATGCCGTGGATTGCCGGAACGGCACTGATTCACTCGTTAGCCGTTACGGA
AAAACGCGGTACTTTTAAAGCTTGGACGGTTTTACTGGCGATATTGGCGTTCTCGCTGTGTTTATTAGGCACCTTCTTAG
TACGTTCCGGTATTTTGGTTTCGGTACATGCGTTTGCTTCCGATCCGACTCGCGGTTTGTATATTCTTGCCTATTTAGTT
TTAGTAATTGGCGGTTCATTATTACTTTACGCTTTACAAGGCTCGAAAATTAAAAGTTTGGATAATTATGAACGTTATTC
GAGAGAATCGATGTTGTTAATTAATAACGTAATGCTGATGGCATTCTTATCCGTAGTGCTGCTGGGTACATTATTACCGT
TAGTACATAAACAAATCGGTTTAGGCACGATTTCGATCGGTGCGCCGTTCTTTGATCAAATGTTTTTAATTTTAATGGTA
CCGTTCTCGTTTATTTTAGGTATCGGGCCATTAGTAAAATGGCGTAGAGATCAAGTATCTGCGATTCGAACACCGGTAAT
TATTGCCTTAATTATGATGGTGGTACTCGGTTTCGGCTTACCGTATTTACTGCACGACCGTATTACTGCCACTTCGGTAT
TAGGCGTGATGATGGCATCGATTATTGTCATTTTGAGCCTATATGAATTACATCAAAGAGCGACGCATAGACATTCATTT
TTAGCCGGTGTGTTTAAATTATCCCGTTCTCATTGGGGGATGGTATTGGCGCACGTAGGTGTCGCAATGACAGTATTCGG
AATCGCATTCAGCCAAAACTATAGCGTAGAGAAAAACGTACGTATGAATGTCGGCGATACGGTATCGCTTCAAGGTTACG
ACTTTACTTTCAAAGGAATCAAAATTACCGACGGTGCGAACTATCAGGGCGGCACGGCTGAAATTGAGATTTCGCGTCAA
GGGCAATATGAATCGACTCTGAATGCGGAGAAACGCTTCTATAACGTCAGTAAAATGGGGATGACCGAAGCGGCAATCGA
CTGGGGCTTTAGAAGAGACTTATATGCCGCTTTAGGTGAAAAGTTGGAAGACGGTTCATGGGGCGTACGTTTATATTATA
AACCGTTTGTTCGCTGGATCTGGATTGGCGGCTTATTTATGGTGTTCGGCGGTTTGCTCTGTATGTTTGACAAACGTTAC
AGATTAAACGTAGTTAAAAAAGCTGCATAA

Upstream 100 bases:

>100_bases
GTGCTGCAGGTATTTCCGAAGCGGATTTAAAAGGTACTTCAGCACGTGATAAAGCTGAAATCGAAAGAACATTAAAGACC
TTACAAGGGGAAGCTAACTA

Downstream 100 bases:

>100_bases
TGCTTTAATAGACAAGCGGTCATTTTTAGAGAAACTATTGCAAAATAGTGATCCGAAAATGACTGCTTTTTACTTTTTTA
AACCATTCGGACAGACCTGA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 649; Mature: 649

Protein sequence:

>649_residues
MVAELGNYALALAFGLSIFLAILPLVGAQKQNSTLMALARPITWAMFLALTISFGSLFYLFAVNDFSVQYVVNNSNSTLP
IQYRLSAVWGSHEGSMLLWVWLLSLWSIAVAAFSRQMPEEAVSRVLSVMGLISIGFLVFLIFSSNPFKRTFPDFPADGRE
LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASLMPWIAGTALIHSLAVTEKRGTFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLV
LVIGGSLLLYALQGSKIKSLDNYERYSRESMLLINNVMLMAFLSVVLLGTLLPLVHKQIGLGTISIGAPFFDQMFLILMV
PFSFILGIGPLVKWRRDQVSAIRTPVIIALIMMVVLGFGLPYLLHDRITATSVLGVMMASIIVILSLYELHQRATHRHSF
LAGVFKLSRSHWGMVLAHVGVAMTVFGIAFSQNYSVEKNVRMNVGDTVSLQGYDFTFKGIKITDGANYQGGTAEIEISRQ
GQYESTLNAEKRFYNVSKMGMTEAAIDWGFRRDLYAALGEKLEDGSWGVRLYYKPFVRWIWIGGLFMVFGGLLCMFDKRY
RLNVVKKAA

Sequences:

>Translated_649_residues
MVAELGNYALALAFGLSIFLAILPLVGAQKQNSTLMALARPITWAMFLALTISFGSLFYLFAVNDFSVQYVVNNSNSTLP
IQYRLSAVWGSHEGSMLLWVWLLSLWSIAVAAFSRQMPEEAVSRVLSVMGLISIGFLVFLIFSSNPFKRTFPDFPADGRE
LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASLMPWIAGTALIHSLAVTEKRGTFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLV
LVIGGSLLLYALQGSKIKSLDNYERYSRESMLLINNVMLMAFLSVVLLGTLLPLVHKQIGLGTISIGAPFFDQMFLILMV
PFSFILGIGPLVKWRRDQVSAIRTPVIIALIMMVVLGFGLPYLLHDRITATSVLGVMMASIIVILSLYELHQRATHRHSF
LAGVFKLSRSHWGMVLAHVGVAMTVFGIAFSQNYSVEKNVRMNVGDTVSLQGYDFTFKGIKITDGANYQGGTAEIEISRQ
GQYESTLNAEKRFYNVSKMGMTEAAIDWGFRRDLYAALGEKLEDGSWGVRLYYKPFVRWIWIGGLFMVFGGLLCMFDKRY
RLNVVKKAA
>Mature_649_residues
MVAELGNYALALAFGLSIFLAILPLVGAQKQNSTLMALARPITWAMFLALTISFGSLFYLFAVNDFSVQYVVNNSNSTLP
IQYRLSAVWGSHEGSMLLWVWLLSLWSIAVAAFSRQMPEEAVSRVLSVMGLISIGFLVFLIFSSNPFKRTFPDFPADGRE
LNPMLQDVGLIFHPPLLYMGYVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
FWDPVENASLMPWIAGTALIHSLAVTEKRGTFKAWTVLLAILAFSLCLLGTFLVRSGILVSVHAFASDPTRGLYILAYLV
LVIGGSLLLYALQGSKIKSLDNYERYSRESMLLINNVMLMAFLSVVLLGTLLPLVHKQIGLGTISIGAPFFDQMFLILMV
PFSFILGIGPLVKWRRDQVSAIRTPVIIALIMMVVLGFGLPYLLHDRITATSVLGVMMASIIVILSLYELHQRATHRHSF
LAGVFKLSRSHWGMVLAHVGVAMTVFGIAFSQNYSVEKNVRMNVGDTVSLQGYDFTFKGIKITDGANYQGGTAEIEISRQ
GQYESTLNAEKRFYNVSKMGMTEAAIDWGFRRDLYAALGEKLEDGSWGVRLYYKPFVRWIWIGGLFMVFGGLLCMFDKRY
RLNVVKKAA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=647, Percent_Identity=60.8964451313756, Blast_Score=786, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=588, Percent_Identity=38.9455782312925, Blast_Score=336, Evalue=3e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72485; Mature: 72485

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVAELGNYALALAFGLSIFLAILPLVGAQKQNSTLMALARPITWAMFLALTISFGSLFYL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEE
FAVNDFSVQYVVNNSNSTLPIQYRLSAVWGSHEGSMLLWVWLLSLWSIAVAAFSRQMPEE
EEECCEEEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
AVSRVLSVMGLISIGFLVFLIFSSNPFKRTFPDFPADGRELNPMLQDVGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCHHHHHH
YVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCEE
FWDPVENASLMPWIAGTALIHSLAVTEKRGTFKAWTVLLAILAFSLCLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPTRGLYILAYLVLVIGGSLLLYALQGSKIKSLDNYERYSRESMLLINNVMLM
EEEECCCCCCCHHHHHHHHHHHHCCHHEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHH
AFLSVVLLGTLLPLVHKQIGLGTISIGAPFFDQMFLILMVPFSFILGIGPLVKWRRDQVS
HHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AIRTPVIIALIMMVVLGFGLPYLLHDRITATSVLGVMMASIIVILSLYELHQRATHRHSF
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGVFKLSRSHWGMVLAHVGVAMTVFGIAFSQNYSVEKNVRMNVGDTVSLQGYDFTFKGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCCEEEECE
KITDGANYQGGTAEIEISRQGQYESTLNAEKRFYNVSKMGMTEAAIDWGFRRDLYAALGE
EEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
KLEDGSWGVRLYYKPFVRWIWIGGLFMVFGGLLCMFDKRYRLNVVKKAA
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure
MVAELGNYALALAFGLSIFLAILPLVGAQKQNSTLMALARPITWAMFLALTISFGSLFYL
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEE
FAVNDFSVQYVVNNSNSTLPIQYRLSAVWGSHEGSMLLWVWLLSLWSIAVAAFSRQMPEE
EEECCEEEEEEEECCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
AVSRVLSVMGLISIGFLVFLIFSSNPFKRTFPDFPADGRELNPMLQDVGLIFHPPLLYMG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCHHHHHH
YVGFSVAFAFAIASLMTGRLDTAWARWSRPWTMAAWVFLTLGIVLGSWWAYYELGWGGWW
HHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCHHHHEEECCCCEE
FWDPVENASLMPWIAGTALIHSLAVTEKRGTFKAWTVLLAILAFSLCLLGTFLVRSGILV
EECCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
SVHAFASDPTRGLYILAYLVLVIGGSLLLYALQGSKIKSLDNYERYSRESMLLINNVMLM
EEEECCCCCCCHHHHHHHHHHHHCCHHEEEEECCCCCCCCHHHHHHCCCHHHHHHHHHHH
AFLSVVLLGTLLPLVHKQIGLGTISIGAPFFDQMFLILMVPFSFILGIGPLVKWRRDQVS
HHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AIRTPVIIALIMMVVLGFGLPYLLHDRITATSVLGVMMASIIVILSLYELHQRATHRHSF
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAGVFKLSRSHWGMVLAHVGVAMTVFGIAFSQNYSVEKNVRMNVGDTVSLQGYDFTFKGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCEEEECCCCEEEECE
KITDGANYQGGTAEIEISRQGQYESTLNAEKRFYNVSKMGMTEAAIDWGFRRDLYAALGE
EEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
KLEDGSWGVRLYYKPFVRWIWIGGLFMVFGGLLCMFDKRYRLNVVKKAA
CCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]