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The map label for this gene is ybaK [H]

Identifier: 126208689

GI number: 126208689

Start: 1404145

End: 1404621

Strand: Reverse

Name: ybaK [H]

Synonym: APL_1221

Alternate gene names: 126208689

Gene position: 1404621-1404145 (Counterclockwise)

Preceding gene: 126208694

Following gene: 126208688

Centisome position: 61.76

GC content: 43.61

Gene sequence:

>477_bases
ATGACCCCGGCAATAAATTTATTGAAAAAGCAAAAAATTGCACATAGGCTTCATCCTTACGAACACGATCCGAATAACAC
CAATTTCGGGCAAGAAGCGGTAGAAAAATTAGGTATTGATGCCAATCAGACATTTAAGACCTTATTAGTCGCAGAAAACG
GCGATCAGAAAAAATTAGCCGTGATGGTGGTGCCGGTTTCGCATACCTTGAATTTAAAACGAGCGGCAAGTGCGCTCGGC
GTGAAAAAAGTGGAAATGGCGGATAAAGATATCGCCCAAAAAACAACCGGCTATTTATTAGGGGGAATCAGCCCGCTCGG
ACAGAAAAAACGTTTAACCACTGTGATTGACAGCTCCGCACAACAATTTTCCACGATGTTTGTTTCCGGCGGTAAACGAG
GGTTGGACGTAGAGCTTGCACCGCAAGATTTGGCAAGTTTGCTCAATGCAACTTTTGCCGATATTAAGGAGGAATAA

Upstream 100 bases:

>100_bases
GTCATTGAACCAGACATAAGTAGTTGCTCCTTTTTATACGCTTGATTTGGCGAACGCACACAAAGGGAGTAATTGTACAT
ATTTTTAAGAGGAAAAACTA

Downstream 100 bases:

>100_bases
GCGGTCGAATTTTTACCGTTTTTTGTAATTTTAAATAAAGAATAATAATCGTTACGGAAAGTTTTGAAAATCCGGATTAA
ATTTAGGACGTACAATTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MTPAINLLKKQKIAHRLHPYEHDPNNTNFGQEAVEKLGIDANQTFKTLLVAENGDQKKLAVMVVPVSHTLNLKRAASALG
VKKVEMADKDIAQKTTGYLLGGISPLGQKKRLTTVIDSSAQQFSTMFVSGGKRGLDVELAPQDLASLLNATFADIKEE

Sequences:

>Translated_158_residues
MTPAINLLKKQKIAHRLHPYEHDPNNTNFGQEAVEKLGIDANQTFKTLLVAENGDQKKLAVMVVPVSHTLNLKRAASALG
VKKVEMADKDIAQKTTGYLLGGISPLGQKKRLTTVIDSSAQQFSTMFVSGGKRGLDVELAPQDLASLLNATFADIKEE
>Mature_157_residues
TPAINLLKKQKIAHRLHPYEHDPNNTNFGQEAVEKLGIDANQTFKTLLVAENGDQKKLAVMVVPVSHTLNLKRAASALGV
KKVEMADKDIAQKTTGYLLGGISPLGQKKRLTTVIDSSAQQFSTMFVSGGKRGLDVELAPQDLASLLNATFADIKEE

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro); has much weaker activity against Ala-tRNA(Pro). Probably compensates for the lack of Cys- tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak ac

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=155, Percent_Identity=65.1612903225806, Blast_Score=213, Evalue=5e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17153; Mature: 17022

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPAINLLKKQKIAHRLHPYEHDPNNTNFGQEAVEKLGIDANQTFKTLLVAENGDQKKLA
CCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEE
VMVVPVSHTLNLKRAASALGVKKVEMADKDIAQKTTGYLLGGISPLGQKKRLTTVIDSSA
EEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
QQFSTMFVSGGKRGLDVELAPQDLASLLNATFADIKEE
HHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TPAINLLKKQKIAHRLHPYEHDPNNTNFGQEAVEKLGIDANQTFKTLLVAENGDQKKLA
CCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCEEE
VMVVPVSHTLNLKRAASALGVKKVEMADKDIAQKTTGYLLGGISPLGQKKRLTTVIDSSA
EEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
QQFSTMFVSGGKRGLDVELAPQDLASLLNATFADIKEE
HHHHHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10813833 [H]