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The map label for this gene is ybfE [H]

Identifier: 126208688

GI number: 126208688

Start: 1403652

End: 1403945

Strand: Reverse

Name: ybfE [H]

Synonym: APL_1220

Alternate gene names: 126208688

Gene position: 1403945-1403652 (Counterclockwise)

Preceding gene: 126208689

Following gene: 126208687

Centisome position: 61.73

GC content: 41.5

Gene sequence:

>294_bases
GTGGAACAAATGGCAAAACAGGATGCAGATTGTATAACCTTAGATCTGTTCGCAACCGTGCCAAAAGTCGGGCGACCCCG
TACTAATCCGTTAAGTAGAGAACAACAAGTTCGTATTAATAAACGTAATCAGCTGAAACGAGATCGTTCGTCCGGCTTAA
AACGTGTAGAGTTAAAATTACATGCGGATTTAGTCCAGACTCTAGAGGATGAAGCGTCGCAACGCGGAGTAACACGCGGA
CAGTTAATCGAAATTATTTTAAATGACTATATTCATAGTCATCAGACTGATTAG

Upstream 100 bases:

>100_bases
CAAGATTAAATTAGTGTGATATAGTGTCGCCTTATTAGTAAGTAGCTTCTCATTCTCAATTAGACTTGTCTATTAGAATG
ATAGGCAAATATCTTTTCGT

Downstream 100 bases:

>100_bases
AGAGAAAATAGGTAAATTCAAATGGCAGTAGTAGGTTTATTCTACGGTAGCGATACTGGTAATACAGAAAACATTGCAAA
AATGATTCAAAAAGAAATCG

Product: LexA regulated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MEQMAKQDADCITLDLFATVPKVGRPRTNPLSREQQVRINKRNQLKRDRSSGLKRVELKLHADLVQTLEDEASQRGVTRG
QLIEIILNDYIHSHQTD

Sequences:

>Translated_97_residues
MEQMAKQDADCITLDLFATVPKVGRPRTNPLSREQQVRINKRNQLKRDRSSGLKRVELKLHADLVQTLEDEASQRGVTRG
QLIEIILNDYIHSHQTD
>Mature_97_residues
MEQMAKQDADCITLDLFATVPKVGRPRTNPLSREQQVRINKRNQLKRDRSSGLKRVELKLHADLVQTLEDEASQRGVTRG
QLIEIILNDYIHSHQTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081770, Length=84, Percent_Identity=59.5238095238095, Blast_Score=100, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002145 [H]

Pfam domain/function: PF01402 RHH_1 [H]

EC number: NA

Molecular weight: Translated: 11177; Mature: 11177

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQMAKQDADCITLDLFATVPKVGRPRTNPLSREQQVRINKRNQLKRDRSSGLKRVELKL
CCCCHHCCCCEEEHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHH
HADLVQTLEDEASQRGVTRGQLIEIILNDYIHSHQTD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEQMAKQDADCITLDLFATVPKVGRPRTNPLSREQQVRINKRNQLKRDRSSGLKRVELKL
CCCCHHCCCCEEEHHHHHHCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHH
HADLVQTLEDEASQRGVTRGQLIEIILNDYIHSHQTD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]