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The map label for this gene is recA [H]

Identifier: 126208613

GI number: 126208613

Start: 1318766

End: 1319896

Strand: Reverse

Name: recA [H]

Synonym: APL_1143

Alternate gene names: 126208613

Gene position: 1319896-1318766 (Counterclockwise)

Preceding gene: 126208614

Following gene: 126208612

Centisome position: 58.03

GC content: 42.44

Gene sequence:

>1131_bases
ATGGCAGCGGATAACAAAAAAGCGCAAAAGAACACAGTAACAAAACAAATCGATCCGGAACAAAAAGAAAAAGCATTAGC
TGCTGCTCTTGCCCAAATTGAAAAACAATTTGGTAAAGGTTCTATTATGCGCTTAGGCGACACGCAAGCGCTTGATATTG
AAGCGGTTTCAACCGGTTCAATCGGTTTAGACGCCGCATTAGGTATCGGTGGCTTACCGATGGGACGTATCGTTGAGATC
TATGGGCCGGAATCTTCAGGTAAAACGACGCTGACTTTATCGGTCATTGCGCAAGCACAAAAATCAGGTAAAACTTGTGC
GTTTATTGATGCGGAACACGCGCTTGATCCGGTTTATGCACGTAAATTAGGCGTGGATACCGATGCATTGTTAATTTCAC
AACCGGATAACGGTGAACAAGCGCTCGAGATTTGTGATGCGTTGGTTCGTTCCGGTGCGGTTGATGTAATTATTGTGGAC
TCGGTTGCTGCATTAACGCCGAAAGCGGAAATTGAAGGCGATATGGGCGATTCTCATATGGGCTTACAAGCACGTTTAAT
GTCACAAGCGTTACGTAAATTAACGGCAAACATTAAGGCGACTAACTGCTTAGTGGTGTTTATCAACCAAATTCGTATGA
AGATCGGTGTGATGTTCGGTAACCCTGAAACAACAACCGGCGGTAACGCACTTAAATTCTACGCTTCGGTTCGTTTAGAT
ATTCGTCGTTCAGGTGTAGTAAAAGACGGAGATGAAGTGGTCGGTAGCGAAACGAAAGTGAAAATTGTGAAAAATAAAGT
TGCGCCGCCGTTCCGTGAAGTTCAATTCGACATTATGTATGGTGAAGGTATTTCACGTATGAATGAACTATTAATTCTTG
CCGAAGCGAATGGCTTTATCCAAAAAGCGGGTGCATGGTTCTCATACGAAGGTACGAAAATCGGTCAAGGTAAAAATAAT
GCAATTAAATGGTTAAAAGAAAATCCGGAGATTGCAGAGAAAATTGAACAAGATATTCGTGAGCAACTTATTTCAACACC
GGAAAAAACATCGGCAGGTGAACAAAATGTGCTAGATGCCGATGATGTGAATGACTTTGAAGACGAAGCGTTTAACGAAG
AAGAACTATAA

Upstream 100 bases:

>100_bases
AAAAAAATGCTTGAAACTGTATAAGTAAACACTATAATAATACACAGTTAATTGACGACAAGCGGTCGTTTTTTCAGAAA
AGTTTGCAAAGGACAATACT

Downstream 100 bases:

>100_bases
TAAAAATGCGGTTTCTGCGAAGGTAGAAACCGCATTTGTTTTTTTATATATTTAATTGTTTATTTTAAGTATGACTAACT
ACACGGCAATAAATTATCTG

Product: recombinase A

Products: NA

Alternate protein names: Recombinase A [H]

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MAADNKKAQKNTVTKQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGSIGLDAALGIGGLPMGRIVEI
YGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRSGVVKDGDEVVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGTKIGQGKNN
AIKWLKENPEIAEKIEQDIREQLISTPEKTSAGEQNVLDADDVNDFEDEAFNEEEL

Sequences:

>Translated_376_residues
MAADNKKAQKNTVTKQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGSIGLDAALGIGGLPMGRIVEI
YGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRSGVVKDGDEVVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGTKIGQGKNN
AIKWLKENPEIAEKIEQDIREQLISTPEKTSAGEQNVLDADDVNDFEDEAFNEEEL
>Mature_375_residues
AADNKKAQKNTVTKQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGSIGLDAALGIGGLPMGRIVEIY
GPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVDS
VAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDI
RRSGVVKDGDEVVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGTKIGQGKNNA
IKWLKENPEIAEKIEQDIREQLISTPEKTSAGEQNVLDADDVNDFEDEAFNEEEL

Specific function: Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with lexA causing its activation

COG id: COG0468

COG function: function code L; RecA/RadA recombinase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family [H]

Homologues:

Organism=Escherichia coli, GI1789051, Length=331, Percent_Identity=74.3202416918429, Blast_Score=518, Evalue=1e-148,

Paralogues:

None

Copy number: 1548 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800-1200 (L-broth) 40,000-60,000 (L-broth + Nalidixate) 4,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013765
- InterPro:   IPR020584
- InterPro:   IPR020588
- InterPro:   IPR020587 [H]

Pfam domain/function: PF00154 RecA [H]

EC number: NA

Molecular weight: Translated: 40545; Mature: 40413

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS00321 RECA_1 ; PS50162 RECA_2 ; PS50163 RECA_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADNKKAQKNTVTKQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGS
CCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCC
IGLDAALGIGGLPMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYA
CCCHHHCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEEHHHHCCHHHH
RKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHM
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCHHCCCCCCCCCC
GLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
CHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHEEEEEEECCCCCCCCCCEEEEEEEEEEE
IRRSGVVKDGDEVVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFI
EHHCCCCCCCHHHCCCCCEEEEEECCCCCCHHHEEEEEEECCCHHHHHHEEEEEECCCCH
QKAGAWFSYEGTKIGQGKNNAIKWLKENPEIAEKIEQDIREQLISTPEKTSAGEQNVLDA
HHCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
DDVNDFEDEAFNEEEL
CCCCCCHHHCCCCCCC
>Mature Secondary Structure 
AADNKKAQKNTVTKQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGS
CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCC
IGLDAALGIGGLPMGRIVEIYGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYA
CCCHHHCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHCCCEEEEEEHHHHCCHHHH
RKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVDSVAALTPKAEIEGDMGDSHM
HHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCHHCCCCCCCCCC
GLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
CHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHEEEEEEECCCCCCCCCCEEEEEEEEEEE
IRRSGVVKDGDEVVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFI
EHHCCCCCCCHHHCCCCCEEEEEECCCCCCHHHEEEEEEECCCHHHHHHEEEEEECCCCH
QKAGAWFSYEGTKIGQGKNNAIKWLKENPEIAEKIEQDIREQLISTPEKTSAGEQNVLDA
HHCCCEEEECCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
DDVNDFEDEAFNEEEL
CCCCCCHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA