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The map label for this gene is rarD [C]

Identifier: 126208519

GI number: 126208519

Start: 1213610

End: 1214452

Strand: Direct

Name: rarD [C]

Synonym: APL_1045

Alternate gene names: 126208519

Gene position: 1213610-1214452 (Clockwise)

Preceding gene: 126208518

Following gene: 126208520

Centisome position: 53.36

GC content: 40.45

Gene sequence:

>843_bases
ATGAGTGCCAATTTTTTATTTGGGCTAGGTTATTATTTTGCGATCTTATTACGCCCGCTTAACGGCGAAAGTATGTTCGG
CTATCGTATCGTAGTATTAGCACCGTTTATCCTATTAGCGATTTTACTGTTTAAGCAAACAAATAAATTCCAACAACTTT
GGCAAAAAATCAAACAAAATCCACCGCTTGTTTTAGTGTTGTTATTGCTCGCTTTGAATACCGGCATTCAGCTTTGGTTG
TTTTTATGGGCGCCGAATAACGGACAAGCGATTGAAGTTTCGATCGGTTATTTGTTACTACCGATTGTTGCTGTGGCGTT
AGGTAAAATTGTGTTTAAAGAGCATTTTACTCTATTAAAATGGTTATCCCTCTGCTGTGCGGTAATCGGAGTAGCTTCGA
ATATTTGGCTAACCGGTTCGTTTTCGTGGGCGACTATTGTCGCCGGTGTCGGTTATCCGCTTTACATTACGCTGCGCCGC
TATTTTGAAATTAACACGCTTGCCACCTTTTTTGTTGAGTTACTGTTGGTTATGCCGTTTGCCGGTTATTTTATTGCACA
AACCGATATGCAACCGATTTTGGCTGACAATCAGTATATCTATTATTTCTTGACACTGTTCGGCTTAGTAAACGGTGCGG
CGTTTATTTTGTATATCGCTTCCAGTAATTTATTACCGGTCAATGTGCTTGGTTTACTCGGTTATGTCGAACCGCTGGTG
ATGCTGTGCGTTTCGTTTATGATTGGCGAAGTATTGGATTCCAAATCCTATCTGCTGATGATTTGCTTGGCACTCGCGAT
CATATTATTAACCGTTGATAATTTTAGGCTGACTCGTAGATGA

Upstream 100 bases:

>100_bases
AGCTGTATTTTTCTTAATTCTGGACGGCATTTTTAGTATTCGAAAACAACGTAAAAAAATGACGACGGAGAAATAAATGT
TAAAGGGCATACTATGCTGC

Downstream 100 bases:

>100_bases
ATGACATTGTAAATTATTGGGGATTTTTGACCGCTTGTATTTTACTGAACCTAACTCCGGGTTCCGATACGATTTATATT
CTTACCCGTACGATTGCGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSANFLFGLGYYFAILLRPLNGESMFGYRIVVLAPFILLAILLFKQTNKFQQLWQKIKQNPPLVLVLLLLALNTGIQLWL
FLWAPNNGQAIEVSIGYLLLPIVAVALGKIVFKEHFTLLKWLSLCCAVIGVASNIWLTGSFSWATIVAGVGYPLYITLRR
YFEINTLATFFVELLLVMPFAGYFIAQTDMQPILADNQYIYYFLTLFGLVNGAAFILYIASSNLLPVNVLGLLGYVEPLV
MLCVSFMIGEVLDSKSYLLMICLALAIILLTVDNFRLTRR

Sequences:

>Translated_280_residues
MSANFLFGLGYYFAILLRPLNGESMFGYRIVVLAPFILLAILLFKQTNKFQQLWQKIKQNPPLVLVLLLLALNTGIQLWL
FLWAPNNGQAIEVSIGYLLLPIVAVALGKIVFKEHFTLLKWLSLCCAVIGVASNIWLTGSFSWATIVAGVGYPLYITLRR
YFEINTLATFFVELLLVMPFAGYFIAQTDMQPILADNQYIYYFLTLFGLVNGAAFILYIASSNLLPVNVLGLLGYVEPLV
MLCVSFMIGEVLDSKSYLLMICLALAIILLTVDNFRLTRR
>Mature_279_residues
SANFLFGLGYYFAILLRPLNGESMFGYRIVVLAPFILLAILLFKQTNKFQQLWQKIKQNPPLVLVLLLLALNTGIQLWLF
LWAPNNGQAIEVSIGYLLLPIVAVALGKIVFKEHFTLLKWLSLCCAVIGVASNIWLTGSFSWATIVAGVGYPLYITLRRY
FEINTLATFFVELLLVMPFAGYFIAQTDMQPILADNQYIYYFLTLFGLVNGAAFILYIASSNLLPVNVLGLLGYVEPLVM
LCVSFMIGEVLDSKSYLLMICLALAIILLTVDNFRLTRR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=285, Percent_Identity=22.4561403508772, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31491; Mature: 31360

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSANFLFGLGYYFAILLRPLNGESMFGYRIVVLAPFILLAILLFKQTNKFQQLWQKIKQN
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
PPLVLVLLLLALNTGIQLWLFLWAPNNGQAIEVSIGYLLLPIVAVALGKIVFKEHFTLLK
CCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
WLSLCCAVIGVASNIWLTGSFSWATIVAGVGYPLYITLRRYFEINTLATFFVELLLVMPF
HHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHH
AGYFIAQTDMQPILADNQYIYYFLTLFGLVNGAAFILYIASSNLLPVNVLGLLGYVEPLV
HHHHEECCCCCHHHCCCCHHHHHHHHHHHHCCHHEEEEEECCCCCHHHHHHHHHHHHHHH
MLCVSFMIGEVLDSKSYLLMICLALAIILLTVDNFRLTRR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEECCC
>Mature Secondary Structure 
SANFLFGLGYYFAILLRPLNGESMFGYRIVVLAPFILLAILLFKQTNKFQQLWQKIKQN
CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
PPLVLVLLLLALNTGIQLWLFLWAPNNGQAIEVSIGYLLLPIVAVALGKIVFKEHFTLLK
CCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
WLSLCCAVIGVASNIWLTGSFSWATIVAGVGYPLYITLRRYFEINTLATFFVELLLVMPF
HHHHHHHHHHHHCCEEEECCCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHH
AGYFIAQTDMQPILADNQYIYYFLTLFGLVNGAAFILYIASSNLLPVNVLGLLGYVEPLV
HHHHEECCCCCHHHCCCCHHHHHHHHHHHHCCHHEEEEEECCCCCHHHHHHHHHHHHHHH
MLCVSFMIGEVLDSKSYLLMICLALAIILLTVDNFRLTRR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]