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The map label for this gene is rarD [C]

Identifier: 126208518

GI number: 126208518

Start: 1212692

End: 1213585

Strand: Direct

Name: rarD [C]

Synonym: APL_1044

Alternate gene names: 126208518

Gene position: 1212692-1213585 (Clockwise)

Preceding gene: 126208517

Following gene: 126208519

Centisome position: 53.32

GC content: 38.37

Gene sequence:

>894_bases
ATGCAACTCGGTATTATTTATTCGCTTTCCGCTTCCGCACTATTCGGCGGAATGTATTATCTTGCGACATTATTGCGCCC
GCTTTCCGGCGAGAGCTTATTCGGCATTCGTATGGTCGTCACTCTGCCCTTCCTATTTTTTGCGATTTTCGTGTTAAAGA
AACAACACGAATTTTTTGCGTTTGCCAAACGTTTAAAACAACAGCCGCATTTAATTTTGGTCATATTGATTACTTCCGCC
ATTGTCGGTTCGCAAATGTGGCTTTTCCTTTGGGCGCCGAACAGCGGTAAGGCGTTGGAAGTTTCAATGGGTTATTTACT
GATGCCGATTGTGATGGTGGCGTTCGGGCGTTTAGTTTATAAAGAAAGCTTATCTCGTGTTAAATGGCTAGCAATTATTT
TTGCAACATTGGGCGTGTTAAATAGTGTGATTTTTGCCGGCGGAATTTCATGGGAAGGTGTATTTGTTTTTGTCGGTTAT
CCGGTTTATTTCCATATTCGCAGAACCTTTCAACTAAGCAATATTTATAGTTTTATTTTTGAAATTATTTTTCTGATTCC
GATTTCGCTTTATTTTATATGGAATACGGATATGGACTTTATTTATGCGCAAAATCCGAATATTTATTACTTTATTGCGG
TTTTAAGCGTAGTAAGCGGCACTGCGCTGCTCTCTTACACATTAGCCAGCACCATATTGCCGTTTAATATGCTTGGCTTA
TTAGGTTATTTAGAGCCGACATTTATGATGATAATTTCATTTTTAATCGGCGAGCGATTGGATCCTAATTCCTATTTTCT
GATGATGTGTCTAGTGATAGCTGTATTTTTCTTAATTCTGGACGGCATTTTTAGTATTCGAAAACAACGTAAAAAAATGA
CGACGGAGAAATAA

Upstream 100 bases:

>100_bases
ATTGAAGAAGCATTAGGGCGTCTTGCCAACTTCTTAAAAACCTATAAACAATCTTAATCTTTTCTCCGCCCCTATTGGGG
CGGATTACGTCTTACCTATT

Downstream 100 bases:

>100_bases
ATGTTAAAGGGCATACTATGCTGCATGAGTGCCAATTTTTTATTTGGGCTAGGTTATTATTTTGCGATCTTATTACGCCC
GCTTAACGGCGAAAGTATGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MQLGIIYSLSASALFGGMYYLATLLRPLSGESLFGIRMVVTLPFLFFAIFVLKKQHEFFAFAKRLKQQPHLILVILITSA
IVGSQMWLFLWAPNSGKALEVSMGYLLMPIVMVAFGRLVYKESLSRVKWLAIIFATLGVLNSVIFAGGISWEGVFVFVGY
PVYFHIRRTFQLSNIYSFIFEIIFLIPISLYFIWNTDMDFIYAQNPNIYYFIAVLSVVSGTALLSYTLASTILPFNMLGL
LGYLEPTFMMIISFLIGERLDPNSYFLMMCLVIAVFFLILDGIFSIRKQRKKMTTEK

Sequences:

>Translated_297_residues
MQLGIIYSLSASALFGGMYYLATLLRPLSGESLFGIRMVVTLPFLFFAIFVLKKQHEFFAFAKRLKQQPHLILVILITSA
IVGSQMWLFLWAPNSGKALEVSMGYLLMPIVMVAFGRLVYKESLSRVKWLAIIFATLGVLNSVIFAGGISWEGVFVFVGY
PVYFHIRRTFQLSNIYSFIFEIIFLIPISLYFIWNTDMDFIYAQNPNIYYFIAVLSVVSGTALLSYTLASTILPFNMLGL
LGYLEPTFMMIISFLIGERLDPNSYFLMMCLVIAVFFLILDGIFSIRKQRKKMTTEK
>Mature_297_residues
MQLGIIYSLSASALFGGMYYLATLLRPLSGESLFGIRMVVTLPFLFFAIFVLKKQHEFFAFAKRLKQQPHLILVILITSA
IVGSQMWLFLWAPNSGKALEVSMGYLLMPIVMVAFGRLVYKESLSRVKWLAIIFATLGVLNSVIFAGGISWEGVFVFVGY
PVYFHIRRTFQLSNIYSFIFEIIFLIPISLYFIWNTDMDFIYAQNPNIYYFIAVLSVVSGTALLSYTLASTILPFNMLGL
LGYLEPTFMMIISFLIGERLDPNSYFLMMCLVIAVFFLILDGIFSIRKQRKKMTTEK

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=251, Percent_Identity=25.4980079681275, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33912; Mature: 33912

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLGIIYSLSASALFGGMYYLATLLRPLSGESLFGIRMVVTLPFLFFAIFVLKKQHEFFA
CCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAKRLKQQPHLILVILITSAIVGSQMWLFLWAPNSGKALEVSMGYLLMPIVMVAFGRLVY
HHHHHCCCCCEEEHHHHHHHHHCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH
KESLSRVKWLAIIFATLGVLNSVIFAGGISWEGVFVFVGYPVYFHIRRTFQLSNIYSFIF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHH
EIIFLIPISLYFIWNTDMDFIYAQNPNIYYFIAVLSVVSGTALLSYTLASTILPFNMLGL
HHHHHHHHHHEEEEECCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGYLEPTFMMIISFLIGERLDPNSYFLMMCLVIAVFFLILDGIFSIRKQRKKMTTEK
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQLGIIYSLSASALFGGMYYLATLLRPLSGESLFGIRMVVTLPFLFFAIFVLKKQHEFFA
CCEEEEEECHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAKRLKQQPHLILVILITSAIVGSQMWLFLWAPNSGKALEVSMGYLLMPIVMVAFGRLVY
HHHHHCCCCCEEEHHHHHHHHHCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHH
KESLSRVKWLAIIFATLGVLNSVIFAGGISWEGVFVFVGYPVYFHIRRTFQLSNIYSFIF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHH
EIIFLIPISLYFIWNTDMDFIYAQNPNIYYFIAVLSVVSGTALLSYTLASTILPFNMLGL
HHHHHHHHHHEEEEECCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGYLEPTFMMIISFLIGERLDPNSYFLMMCLVIAVFFLILDGIFSIRKQRKKMTTEK
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]