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The map label for this gene is dcuD [C]

Identifier: 126208346

GI number: 126208346

Start: 1009886

End: 1011178

Strand: Reverse

Name: dcuD [C]

Synonym: APL_0870

Alternate gene names: 126208346

Gene position: 1011178-1009886 (Counterclockwise)

Preceding gene: 126208347

Following gene: 126208345

Centisome position: 44.46

GC content: 45.24

Gene sequence:

>1293_bases
ATGGATGAACTCAAACCTTTTGTTGCCATTCTCGGCATTGTGGTCACGGTTTACCTGTTGATTAAAAAATATGAAACCCG
AACGGTATTAATCGGTATCGGTTTGATTATGTCGGTTGTAACGCTTAATCCGATGGGAGCATTAGATGCCTTTGCTAAAT
CAATGACTTCAAGCGGTCTGATTATGGCGATTTGTTCCAGTATGGGTTTTGCCTATGTAATGAAATATACCCAATGCGAT
ACGCATTTGGTGCATTTGCTGACTAAACCGTTAAGCGGTCTTAAATTCTTTTTAATCCCGATTGCGACCATTATTACTTT
CTTTATTAACATTGCGATTCCGTCTGCGGCAGGTTGTGCGGCTGCGGTGGGGGCAACCTTAATTCCGGTATTAAAAAGTG
CGGGAGTACGCCCTGCAACCGCCGGTGCGGCGATTTTGGCAGGAACATTCGGTTCGATGATGAGCCCGGGTTCTTCTCAC
TCGGCAATGATTAGTGAAATGTCGAATTTAACTATTACCGAAGTGAACCTTTCCCATGCGCCTTATACCATGATCGCCGG
CGCTATCGGCGCAGTCGCTTTGACTTTAATGGCAATCATTTTTAAAGATTACGGTGAAGAGCATCGTAAAGCTTATTTAG
CTGAAAACCAAAATGCGGAAACCAAGTTTAGCGGCGTTAATCCGTTATATGCGCTTGCTCCGTTATTACCGTTAATTATC
CTTGTTATCGGTGGTACAGAATTACAAAAAACACCGGGCTTAGAATGGACAAAAATGGGCGTACCGCAAGCGATGTTAAT
CGGTGCGATTTATGCAATTATTGTTACGCGTATTTCGCCAGTGAAAATTACCGAAGAATTCTTCAACGGTATGGGTAATT
CGTATGCTAATGTTCTCGGTATTATTATTGCCGCAAGCGTATTTGTATCCGGCTTAAAAGCAACTGGTGCGGTAGATTCG
GCAATTGAATTCCTTAAACACTCAAATGAATTTGTCCGTTGGGGGGCGACTATCGGTCCGTTCCTAATGGGGATTGTGAC
CGGTTCGGGCGATGCGGCGGCGATTGCGTTTAATACTGCAGTAACGCCTCACGCAGTGGAATTGGGTTATACCCATGTGA
ATTTAGGTATGGCGGCAGCGATCGCCGGTGCTATCGGTCGTACAATGTCACCGATTGCCGGGGTAACCATTGTTTGTGCG
GGCTTGGCTATGGTCAGTCCGGTCGAGATGGTAAAACGTACCGCACCGGGTATGATTTTAGCCACCTTGTTCTTGGCGTT
GTTTATGTTGTAA

Upstream 100 bases:

>100_bases
GCGACCGTACTTGGTGCACAAGATATTCTCTGTTTTAGTGAAAAAATGCAACTTGATACTAAAGCGGTAAATTCAACATT
TAATTACTAAGGAATTTATT

Downstream 100 bases:

>100_bases
AACATATTAAGGAAAAGCCGCACTGAAATGATCTGCACCCCAAAAGTGCGGCTTATTTTTTATCTGATTAAATTAGGATG
ATAGGTGGTGATTATGTCAA

Product: putative C4-dicarboxylate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MDELKPFVAILGIVVTVYLLIKKYETRTVLIGIGLIMSVVTLNPMGALDAFAKSMTSSGLIMAICSSMGFAYVMKYTQCD
THLVHLLTKPLSGLKFFLIPIATIITFFINIAIPSAAGCAAAVGATLIPVLKSAGVRPATAGAAILAGTFGSMMSPGSSH
SAMISEMSNLTITEVNLSHAPYTMIAGAIGAVALTLMAIIFKDYGEEHRKAYLAENQNAETKFSGVNPLYALAPLLPLII
LVIGGTELQKTPGLEWTKMGVPQAMLIGAIYAIIVTRISPVKITEEFFNGMGNSYANVLGIIIAASVFVSGLKATGAVDS
AIEFLKHSNEFVRWGATIGPFLMGIVTGSGDAAAIAFNTAVTPHAVELGYTHVNLGMAAAIAGAIGRTMSPIAGVTIVCA
GLAMVSPVEMVKRTAPGMILATLFLALFML

Sequences:

>Translated_430_residues
MDELKPFVAILGIVVTVYLLIKKYETRTVLIGIGLIMSVVTLNPMGALDAFAKSMTSSGLIMAICSSMGFAYVMKYTQCD
THLVHLLTKPLSGLKFFLIPIATIITFFINIAIPSAAGCAAAVGATLIPVLKSAGVRPATAGAAILAGTFGSMMSPGSSH
SAMISEMSNLTITEVNLSHAPYTMIAGAIGAVALTLMAIIFKDYGEEHRKAYLAENQNAETKFSGVNPLYALAPLLPLII
LVIGGTELQKTPGLEWTKMGVPQAMLIGAIYAIIVTRISPVKITEEFFNGMGNSYANVLGIIIAASVFVSGLKATGAVDS
AIEFLKHSNEFVRWGATIGPFLMGIVTGSGDAAAIAFNTAVTPHAVELGYTHVNLGMAAAIAGAIGRTMSPIAGVTIVCA
GLAMVSPVEMVKRTAPGMILATLFLALFML
>Mature_430_residues
MDELKPFVAILGIVVTVYLLIKKYETRTVLIGIGLIMSVVTLNPMGALDAFAKSMTSSGLIMAICSSMGFAYVMKYTQCD
THLVHLLTKPLSGLKFFLIPIATIITFFINIAIPSAAGCAAAVGATLIPVLKSAGVRPATAGAAILAGTFGSMMSPGSSH
SAMISEMSNLTITEVNLSHAPYTMIAGAIGAVALTLMAIIFKDYGEEHRKAYLAENQNAETKFSGVNPLYALAPLLPLII
LVIGGTELQKTPGLEWTKMGVPQAMLIGAIYAIIVTRISPVKITEEFFNGMGNSYANVLGIIIAASVFVSGLKATGAVDS
AIEFLKHSNEFVRWGATIGPFLMGIVTGSGDAAAIAFNTAVTPHAVELGYTHVNLGMAAAIAGAIGRTMSPIAGVTIVCA
GLAMVSPVEMVKRTAPGMILATLFLALFML

Specific function: Cryptic C4-dicarboxylate carrier [C]

COG id: COG3069

COG function: function code C; C4-dicarboxylate transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dcuC/dcuD transporter (TC 2.A.61) family [H]

Homologues:

Organism=Escherichia coli, GI1789622, Length=448, Percent_Identity=26.7857142857143, Blast_Score=101, Evalue=9e-23,
Organism=Escherichia coli, GI1786839, Length=370, Percent_Identity=24.0540540540541, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018385
- InterPro:   IPR004669 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 44869; Mature: 44869

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELKPFVAILGIVVTVYLLIKKYETRTVLIGIGLIMSVVTLNPMGALDAFAKSMTSSGL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
IMAICSSMGFAYVMKYTQCDTHLVHLLTKPLSGLKFFLIPIATIITFFINIAIPSAAGCA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
AAVGATLIPVLKSAGVRPATAGAAILAGTFGSMMSPGSSHSAMISEMSNLTITEVNLSHA
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCC
PYTMIAGAIGAVALTLMAIIFKDYGEEHRKAYLAENQNAETKFSGVNPLYALAPLLPLII
CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
LVIGGTELQKTPGLEWTKMGVPQAMLIGAIYAIIVTRISPVKITEEFFNGMGNSYANVLG
HHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
IIIAASVFVSGLKATGAVDSAIEFLKHSNEFVRWGATIGPFLMGIVTGSGDAAAIAFNTA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEECCCHHHHHHHHHEECCCCEEEEEEECC
VTPHAVELGYTHVNLGMAAAIAGAIGRTMSPIAGVTIVCAGLAMVSPVEMVKRTAPGMIL
CCCCHHEECCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ATLFLALFML
HHHHHHHHHC
>Mature Secondary Structure
MDELKPFVAILGIVVTVYLLIKKYETRTVLIGIGLIMSVVTLNPMGALDAFAKSMTSSGL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCH
IMAICSSMGFAYVMKYTQCDTHLVHLLTKPLSGLKFFLIPIATIITFFINIAIPSAAGCA
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
AAVGATLIPVLKSAGVRPATAGAAILAGTFGSMMSPGSSHSAMISEMSNLTITEVNLSHA
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCC
PYTMIAGAIGAVALTLMAIIFKDYGEEHRKAYLAENQNAETKFSGVNPLYALAPLLPLII
CHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
LVIGGTELQKTPGLEWTKMGVPQAMLIGAIYAIIVTRISPVKITEEFFNGMGNSYANVLG
HHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHH
IIIAASVFVSGLKATGAVDSAIEFLKHSNEFVRWGATIGPFLMGIVTGSGDAAAIAFNTA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEECCCHHHHHHHHHEECCCCEEEEEEECC
VTPHAVELGYTHVNLGMAAAIAGAIGRTMSPIAGVTIVCAGLAMVSPVEMVKRTAPGMIL
CCCCHHEECCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ATLFLALFML
HHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]