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The map label for this gene is xseB

Identifier: 126208282

GI number: 126208282

Start: 929073

End: 929297

Strand: Direct

Name: xseB

Synonym: APL_0806

Alternate gene names: 126208282

Gene position: 929073-929297 (Clockwise)

Preceding gene: 126208279

Following gene: 126208283

Centisome position: 40.85

GC content: 39.56

Gene sequence:

>225_bases
ATGGCTAAAAAACCCACCCAAGATTTTGAATCAACCCTTAAAGAATTAGAAGCAATCGTCAGCCACTTAGAAACGGGCGA
GTTGCCTTTAGAAGAAGCACTTAATGAGTTTGAAACTGCGGTAAAACTTGTGCAACAAGGACAAGAACGCTTACAAAAAG
CGGAACAACGCATTCAAATCTTACTCAATAAAAACGACCAAGCCGAACTTTCCGATTACGAATAA

Upstream 100 bases:

>100_bases
GCACCATACCCAAAAGCGGTGAAAAAGTAAAAGGAATTTGCAAATAAAGAAGGTAAACGATAAACTTACGCCATTTATCG
CCCTAAATTAGGTAATTAAA

Downstream 100 bases:

>100_bases
AAATAACAATGAGCTATTCTCTCTCAACCGATCTTAGCGTTATACAACAGCGCATTAATGATTTCTTAAGTACCAAATTA
AAAACCTATCCAGCTTATGA

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 74; Mature: 73

Protein sequence:

>74_residues
MAKKPTQDFESTLKELEAIVSHLETGELPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLNKNDQAELSDYE

Sequences:

>Translated_74_residues
MAKKPTQDFESTLKELEAIVSHLETGELPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLNKNDQAELSDYE
>Mature_73_residues
AKKPTQDFESTLKELEAIVSHLETGELPLEEALNEFETAVKLVQQGQERLQKAEQRIQILLNKNDQAELSDYE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

Organism=Escherichia coli, GI1786624, Length=65, Percent_Identity=61.5384615384615, Blast_Score=82, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_ACTP2 (A3N0G6)

Other databases:

- EMBL:   CP000569
- RefSeq:   YP_001053507.1
- ProteinModelPortal:   A3N0G6
- SMR:   A3N0G6
- STRING:   A3N0G6
- GeneID:   4849309
- GenomeReviews:   CP000569_GR
- KEGG:   apl:APL_0806
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   PENASPV
- PhylomeDB:   A3N0G6
- ProtClustDB:   PRK00977
- BioCyc:   APLE416269:APL_0806-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8499; Mature: 8367

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKPTQDFESTLKELEAIVSHLETGELPLEEALNEFETAVKLVQQGQERLQKAEQRIQI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNKNDQAELSDYE
HHCCCCCCCCCCCC
>Mature Secondary Structure 
AKKPTQDFESTLKELEAIVSHLETGELPLEEALNEFETAVKLVQQGQERLQKAEQRIQI
CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLNKNDQAELSDYE
HHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA