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The map label for this gene is yhjC [C]

Identifier: 126208266

GI number: 126208266

Start: 909512

End: 910399

Strand: Reverse

Name: yhjC [C]

Synonym: APL_0788

Alternate gene names: 126208266

Gene position: 910399-909512 (Counterclockwise)

Preceding gene: 126208268

Following gene: 126208265

Centisome position: 40.03

GC content: 45.38

Gene sequence:

>888_bases
ATGGACTTAAATAATCTTCGTCTCTTCGTTACGGTTTATCAAGCGGAGAGTTTTTCTAAAGCGGCGGAACAGCTTGCAAT
GCCAGTTGCGACGGTTAGTCGCCGTATTGCGGAATTTGAAAAATCGCTTTCCACCCAACTTTTTGACCGCTATAAAACAG
GGGTGAAACCGACCGCACTTGGTTTGCAATTGTATGAAAAGGTTTATTTGATCTTCCACAATTTAACGCAAGCGACACAA
GATTTTATTGGTGAACAGCAGGAATTGAGTGGCTATCTGCGTATTTCCACCGTTTCCGCCTGTGAGCCGATTTGGGCGGC
AATTGCTGAATTTCAGGCGGAATATCCGCAGGTGAAAGTACATTGTCAGGCGACCGATCGCGTATTGGATTTGGTAGAAG
ATGGCATTGATATCGCGTTTCGAATGGGCGATTTGCATACGGAAAATGTTATTGCTCGCAAAATGATGGATTTAAACGCT
GTACTGGTGGCTCACCCTGATTTTCTTGCTAGACACGGCACGCCGAAAACACCGCAAGATTTGACCGCACTACCATTTGC
CTGCTGGGCAAGAGCAGGGCAGAAAAGTGCAACATTACAACTGGGTGAACAAGCGGTCAAAATTGAACCGATTTTTACCT
CTAATGACGTGTATGCCATTGCCCACCAAGCCAAAAATGCGCATGCCATCTGCCAATTACCGGATTATATGGCACAAGAA
CTCACCGAGAAATTCGGCTTAGTCGAACTGATGTCCGACTATCCGACATCAACCTATCCCATTCACGCCATTTATCCCGC
TCACCGCCATCCCTCAGCAATCATGAAAACCTTTTTAGGGTTTTGTGAGAGGTTTTTAGCAGAAAGAGAGAAATGCTGTA
AAGATTAA

Upstream 100 bases:

>100_bases
TTGTCCTTTTTTACAAATGAATAGTGGCTATTATAATCTTGCAAAATTGGTTGAGAAGCATCTAAAATAAGAACAATTTT
CCCAAAAATGAGAAGTAAAT

Downstream 100 bases:

>100_bases
CCATGTCTTCGCACTCTCCCATTTATGGGAGAGAAATCGCAGAAGGATCGTTCCAGAATCCATAGGAAGAGGGAGAAAGA
TCTTCTCCTTTCTTCTTAAT

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MDLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTALGLQLYEKVYLIFHNLTQATQ
DFIGEQQELSGYLRISTVSACEPIWAAIAEFQAEYPQVKVHCQATDRVLDLVEDGIDIAFRMGDLHTENVIARKMMDLNA
VLVAHPDFLARHGTPKTPQDLTALPFACWARAGQKSATLQLGEQAVKIEPIFTSNDVYAIAHQAKNAHAICQLPDYMAQE
LTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGFCERFLAEREKCCKD

Sequences:

>Translated_295_residues
MDLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTALGLQLYEKVYLIFHNLTQATQ
DFIGEQQELSGYLRISTVSACEPIWAAIAEFQAEYPQVKVHCQATDRVLDLVEDGIDIAFRMGDLHTENVIARKMMDLNA
VLVAHPDFLARHGTPKTPQDLTALPFACWARAGQKSATLQLGEQAVKIEPIFTSNDVYAIAHQAKNAHAICQLPDYMAQE
LTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGFCERFLAEREKCCKD
>Mature_295_residues
MDLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTALGLQLYEKVYLIFHNLTQATQ
DFIGEQQELSGYLRISTVSACEPIWAAIAEFQAEYPQVKVHCQATDRVLDLVEDGIDIAFRMGDLHTENVIARKMMDLNA
VLVAHPDFLARHGTPKTPQDLTALPFACWARAGQKSATLQLGEQAVKIEPIFTSNDVYAIAHQAKNAHAICQLPDYMAQE
LTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGFCERFLAEREKCCKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=297, Percent_Identity=28.956228956229, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI87081978, Length=294, Percent_Identity=29.2517006802721, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=27.2108843537415, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789440, Length=291, Percent_Identity=27.8350515463918, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787589, Length=295, Percent_Identity=24.0677966101695, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789639, Length=269, Percent_Identity=22.6765799256506, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787128, Length=287, Percent_Identity=22.2996515679443, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=28.4584980237154, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=181, Percent_Identity=27.6243093922652, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33208; Mature: 33208

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL
CCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
GLQLYEKVYLIFHNLTQATQDFIGEQQELSGYLRISTVSACEPIWAAIAEFQAEYPQVKV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEE
HCQATDRVLDLVEDGIDIAFRMGDLHTENVIARKMMDLNAVLVAHPDFLARHGTPKTPQD
EECHHHHHHHHHHCCHHEEEEECCCCHHHHHHHHHHHHCEEEEECCHHHHHCCCCCCCCC
LTALPFACWARAGQKSATLQLGEQAVKIEPIFTSNDVYAIAHQAKNAHAICQLPDYMAQE
HHHHHHHHHHHCCCCCHHHHHCCCEEEEEEEEECCCEEEEEECCCCCCEEECCHHHHHHH
LTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGFCERFLAEREKCCKD
HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLNNLRLFVTVYQAESFSKAAEQLAMPVATVSRRIAEFEKSLSTQLFDRYKTGVKPTAL
CCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
GLQLYEKVYLIFHNLTQATQDFIGEQQELSGYLRISTVSACEPIWAAIAEFQAEYPQVKV
HHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEE
HCQATDRVLDLVEDGIDIAFRMGDLHTENVIARKMMDLNAVLVAHPDFLARHGTPKTPQD
EECHHHHHHHHHHCCHHEEEEECCCCHHHHHHHHHHHHCEEEEECCHHHHHCCCCCCCCC
LTALPFACWARAGQKSATLQLGEQAVKIEPIFTSNDVYAIAHQAKNAHAICQLPDYMAQE
HHHHHHHHHHHCCCCCHHHHHCCCEEEEEEEEECCCEEEEEECCCCCCEEECCHHHHHHH
LTEKFGLVELMSDYPTSTYPIHAIYPAHRHPSAIMKTFLGFCERFLAEREKCCKD
HHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]