Click here to switch to the map view.

The map label for this gene is ctpA [H]

Identifier: 126176515

GI number: 126176515

Start: 5067474

End: 5068679

Strand: Direct

Name: ctpA [H]

Synonym: Sbal_4334

Alternate gene names: 126176515

Gene position: 5067474-5068679 (Clockwise)

Preceding gene: 126176514

Following gene: 126176516

Centisome position: 98.83

GC content: 47.76

Gene sequence:

>1206_bases
ATGAAACACATGATCCGCTATATCAGTTGCGTTGGATTAGGCCTAACTTTGGGCCTATCCATCAGCCTCTCTAGTCAAGA
GAACGCTAAGTCCTATCGCAGTGATTTTGACTATCCGTTACTGCAAGATGTGCTTGAAACCGTTGAAACTTATTATGTGA
AAACCGTTTCAAAAGAAGAGTTAGTGCAAGCGGCAATCAAAGGTATTTTTGAGCACTTAGATCCCTATTCCAGCTTTTTG
AATCACCAAGAATTACTCGATCTCAAAGACTCCAATCGCGGCGAATATTTTGGTTTCGGCTTCGAAGTCGCAACCCAAAA
TGACCACATCAACATCATCGCCCCCTTCGCCCATTCCCCTGCAGAACAAGCGGGAATACGCGCGGGCGACATTATCGTTA
AGCTCAACGACACACTGGCGACCGAGACTAACCTCGCCAATATTCTCGCCGAAATAAAAAAACATAGCCTCAGCAATCAA
AGCATTAAGCTAGTGCTCAAGCACAGCAATGACGATGCGACCTTTGAGGTGTCACTCAAGCCGAGCACTATCACTATCGA
ATCTGTCACCACTCAACTACTTGATGGCAATATTGGTTATGTCAGATTAAGTAGCTTCCAAGAAAACTCGACCGAAGATA
TGGTGCGCTCACTTAGCCAATGGCAAAACAAACCGCTCGCCGGACTCATCTTAGATTTACGTAACAATCCCGGCGGCCTG
CTCGACCAAGCCGTTAAAATTGCTGACCTATTCCTCGCCAAGGGCCGAATAGTCTCAACCTCTGGCCGCTTCTTCGATGC
CAACTCCGACTACTACGCCTCACCACAAACCATGCTGACTAACGTGCCCATGCTAGTGTTGATCAACAAAGGCTCGGCCT
CTGCATCCGAAGTGCTCGCCGCCGCACTGCAGGAAAATGGTCGAGCTAAGCTCTTAGGTGAAACCAGTTTTGGTAAAGGC
ACAGTACAAAGCCTGATCCCCATCTTAGAAGACGGTAACGCGATAAAACTCACCATTGCCCAGTACAATACCCCCAGAGG
TGAAAACATTCACAACATAGGAATCGTCCCAGACATAAAAATTGCCGCAGAAACTGGTTCCGGCGCGGGTAATTTGGCTA
TAATCGACGCCCTATCCGCCCATGCATCTCTGGCCCAAGATCATCAAGTGACCTCGGCGATTGCATGGATACAGCATCAT
GACTAA

Upstream 100 bases:

>100_bases
AGGCTGGCCTATACTTTGAAATAAGGCACAAGGGGCAAGCCGTCGATCCAGCGAAATACTGTCGCTAATCATAACGGTCC
CCTCATCACAGGGGACGGCT

Downstream 100 bases:

>100_bases
TAAGAAGAAACTGTGCGCTTACTTTATTCCTTGGCCCTATTGGCCCTAAGCATTTCTCAAAGTCATGCTGCCCAGATTGC
GCTCATTATTGATGACATAG

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 401; Mature: 401

Protein sequence:

>401_residues
MKHMIRYISCVGLGLTLGLSISLSSQENAKSYRSDFDYPLLQDVLETVETYYVKTVSKEELVQAAIKGIFEHLDPYSSFL
NHQELLDLKDSNRGEYFGFGFEVATQNDHINIIAPFAHSPAEQAGIRAGDIIVKLNDTLATETNLANILAEIKKHSLSNQ
SIKLVLKHSNDDATFEVSLKPSTITIESVTTQLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNKPLAGLILDLRNNPGGL
LDQAVKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLAAALQENGRAKLLGETSFGKG
TVQSLIPILEDGNAIKLTIAQYNTPRGENIHNIGIVPDIKIAAETGSGAGNLAIIDALSAHASLAQDHQVTSAIAWIQHH
D

Sequences:

>Translated_401_residues
MKHMIRYISCVGLGLTLGLSISLSSQENAKSYRSDFDYPLLQDVLETVETYYVKTVSKEELVQAAIKGIFEHLDPYSSFL
NHQELLDLKDSNRGEYFGFGFEVATQNDHINIIAPFAHSPAEQAGIRAGDIIVKLNDTLATETNLANILAEIKKHSLSNQ
SIKLVLKHSNDDATFEVSLKPSTITIESVTTQLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNKPLAGLILDLRNNPGGL
LDQAVKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLAAALQENGRAKLLGETSFGKG
TVQSLIPILEDGNAIKLTIAQYNTPRGENIHNIGIVPDIKIAAETGSGAGNLAIIDALSAHASLAQDHQVTSAIAWIQHH
D
>Mature_401_residues
MKHMIRYISCVGLGLTLGLSISLSSQENAKSYRSDFDYPLLQDVLETVETYYVKTVSKEELVQAAIKGIFEHLDPYSSFL
NHQELLDLKDSNRGEYFGFGFEVATQNDHINIIAPFAHSPAEQAGIRAGDIIVKLNDTLATETNLANILAEIKKHSLSNQ
SIKLVLKHSNDDATFEVSLKPSTITIESVTTQLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNKPLAGLILDLRNNPGGL
LDQAVKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLAAALQENGRAKLLGETSFGKG
TVQSLIPILEDGNAIKLTIAQYNTPRGENIHNIGIVPDIKIAAETGSGAGNLAIIDALSAHASLAQDHQVTSAIAWIQHH
D

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=323, Percent_Identity=26.3157894736842, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 43577; Mature: 43577

Theoretical pI: Translated: 5.22; Mature: 5.22

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHMIRYISCVGLGLTLGLSISLSSQENAKSYRSDFDYPLLQDVLETVETYYVKTVSKEE
CHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHH
LVQAAIKGIFEHLDPYSSFLNHQELLDLKDSNRGEYFGFGFEVATQNDHINIIAPFAHSP
HHHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCC
AEQAGIRAGDIIVKLNDTLATETNLANILAEIKKHSLSNQSIKLVLKHSNDDATFEVSLK
HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEC
PSTITIESVTTQLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNKPLAGLILDLRNNPGGL
CCEEEHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
LDQAVKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLA
HHHHHHHHHHHHHCCEEEECCCCEEECCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHH
AALQENGRAKLLGETSFGKGTVQSLIPILEDGNAIKLTIAQYNTPRGENIHNIGIVPDIK
HHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEECCCCCEE
IAAETGSGAGNLAIIDALSAHASLAQDHQVTSAIAWIQHHD
EEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEECC
>Mature Secondary Structure
MKHMIRYISCVGLGLTLGLSISLSSQENAKSYRSDFDYPLLQDVLETVETYYVKTVSKEE
CHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHH
LVQAAIKGIFEHLDPYSSFLNHQELLDLKDSNRGEYFGFGFEVATQNDHINIIAPFAHSP
HHHHHHHHHHHHCCHHHHHCCHHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEECCCCCC
AEQAGIRAGDIIVKLNDTLATETNLANILAEIKKHSLSNQSIKLVLKHSNDDATFEVSLK
HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEC
PSTITIESVTTQLLDGNIGYVRLSSFQENSTEDMVRSLSQWQNKPLAGLILDLRNNPGGL
CCEEEHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHH
LDQAVKIADLFLAKGRIVSTSGRFFDANSDYYASPQTMLTNVPMLVLINKGSASASEVLA
HHHHHHHHHHHHHCCEEEECCCCEEECCCCCCCCCHHHHHCCCEEEEEECCCCCHHHHHH
AALQENGRAKLLGETSFGKGTVQSLIPILEDGNAIKLTIAQYNTPRGENIHNIGIVPDIK
HHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCEEECCCCCEE
IAAETGSGAGNLAIIDALSAHASLAQDHQVTSAIAWIQHHD
EEEECCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]