Click here to switch to the map view.

The map label for this gene is insF1 [H]

Identifier: 126176496

GI number: 126176496

Start: 5046930

End: 5047685

Strand: Direct

Name: insF1 [H]

Synonym: Sbal_4312

Alternate gene names: 126176496

Gene position: 5046930-5047685 (Clockwise)

Preceding gene: 126176495

Following gene: 126176497

Centisome position: 98.43

GC content: 45.63

Gene sequence:

>756_bases
TTGAAAAACACCGCACTGAAGCTTTATCGCCTTGTTAGACAGCTATTTAAGCAAAGTCGAGGCAGCTTAGGAAATCGTGA
AATGGTGAAGAAATTGCGCAAGGAAGGCTACCAGGTTGGTCGCTATCTCGTTCGTAAAATTATGCACCGCCTTCGACTCA
AAGCAACCCAGCGACGCGCTTACAAGGTGACGACACAGCGAAAACACTCAGATGCAGTGGCAGATAACCTGCTAAACATG
AACTTTAACCCCGTATCGGCTAATGAGGTTTGGGCGGGTGACGTGACCTATTTAAAGACGGGTGAGGGCTGGATGTATTT
AGCTGTGGTGATGGATTTATATTCACGCCGGATTGTGGGATGGCACATAGACAAACGCATGACCACGGATTTGATATCTA
AGGCATTAATAAAAGCCTACAACCTGCGCCAACCGGCCAGAGGGCTGGTATTTCACAGTGACCGAGGCTCGCAATATACC
AGTAAGCAATTCGGTAGGCTGCTATTGAGCTATGGTATCCGAGCCAGCATGGGTGATGTGGGAGCGTGTTGGGATAATGC
CGTTGTTGAGCGATTCTTTGGCAGCTTAAAACACGATTGGATTTTTAAAGTTAATCAACCAACAAGGGAGTTTATGAAGC
AAGATGTGACTGCTTACATGAAATATTACAACTTGGAGCGACTTCATTCTGCTAATGGTGATCTGTCACCTGTAGAGTTT
GAAAATTCTCAACTAAAAGTGTCCAGTTTGGGTTGA

Upstream 100 bases:

>100_bases
ATTGTGAAGCGGTTGGCGCTGTAACACTCAACCCAGATAAGGCACCAGTAGAAGGCGTAATAAATGCAGCTTGATTTTTA
AACAAAGAGTGACAACTATC

Downstream 100 bases:

>100_bases
CCAGTACAAACGAACCGGGGCTAGTGTTTAGCACCAAAAATGATCGGATAAAAGGGTATGTAAAAACTTGGGGAACCATA
TTTGCCGAGTTTGATTTGGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MKNTALKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRRAYKVTTQRKHSDAVADNLLNM
NFNPVSANEVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWHIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYT
SKQFGRLLLSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVNQPTREFMKQDVTAYMKYYNLERLHSANGDLSPVEF
ENSQLKVSSLG

Sequences:

>Translated_251_residues
MKNTALKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRRAYKVTTQRKHSDAVADNLLNM
NFNPVSANEVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWHIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYT
SKQFGRLLLSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVNQPTREFMKQDVTAYMKYYNLERLHSANGDLSPVEF
ENSQLKVSSLG
>Mature_251_residues
MKNTALKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRRAYKVTTQRKHSDAVADNLLNM
NFNPVSANEVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVGWHIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYT
SKQFGRLLLSYGIRASMGDVGACWDNAVVERFFGSLKHDWIFKVNQPTREFMKQDVTAYMKYYNLERLHSANGDLSPVEF
ENSQLKVSSLG

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=211, Percent_Identity=36.4928909952607, Blast_Score=145, Evalue=3e-35,
Organism=Escherichia coli, GI1788405, Length=236, Percent_Identity=39.8305084745763, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1787263, Length=236, Percent_Identity=39.8305084745763, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1786753, Length=236, Percent_Identity=39.8305084745763, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1786570, Length=236, Percent_Identity=39.8305084745763, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1786490, Length=236, Percent_Identity=39.8305084745763, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1789981, Length=234, Percent_Identity=32.0512820512821, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 29143; Mature: 29143

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTALKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRRA
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKVTTQRKHSDAVADNLLNMNFNPVSANEVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCHHHHHHHHHHHHCCHHE
WHIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSKQFGRLLLSYGIRASMGDV
EECCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC
GACWDNAVVERFFGSLKHDWIFKVNQPTREFMKQDVTAYMKYYNLERLHSANGDLSPVEF
HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
ENSQLKVSSLG
CCCEEEEECCC
>Mature Secondary Structure
MKNTALKLYRLVRQLFKQSRGSLGNREMVKKLRKEGYQVGRYLVRKIMHRLRLKATQRRA
CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKVTTQRKHSDAVADNLLNMNFNPVSANEVWAGDVTYLKTGEGWMYLAVVMDLYSRRIVG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCHHHHHHHHHHHHCCHHE
WHIDKRMTTDLISKALIKAYNLRQPARGLVFHSDRGSQYTSKQFGRLLLSYGIRASMGDV
EECCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCC
GACWDNAVVERFFGSLKHDWIFKVNQPTREFMKQDVTAYMKYYNLERLHSANGDLSPVEF
HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEE
ENSQLKVSSLG
CCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]