| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is yusP [H]
Identifier: 126176480
GI number: 126176480
Start: 5029799
End: 5031262
Strand: Reverse
Name: yusP [H]
Synonym: Sbal_4295
Alternate gene names: 126176480
Gene position: 5031262-5029799 (Counterclockwise)
Preceding gene: 126176481
Following gene: 126176479
Centisome position: 98.13
GC content: 52.53
Gene sequence:
>1464_bases ATGTCCTTAGAGCCTGCGTTATCCCAGAGTGACCCTTTACCGACTTCTGTTTTTCTCGCCATTTTCTCGGCCGTATTCTT GCCCATGTTTTTGGCGGCGGTCGATCAAACCTTACTCGCAACGGCAACACCAGCCATAGTTGAAGATCTTGGCGGCCTGC GCCAAGCCTCGTGGATCACTATCGGTTATATGCTGGCGATGGCCGCTTCTGTGCCGATTTATGGCTGGTTAGGGGATAAC TTCGGTCGCGCGAAAATCCTGATGATCGCCATAGTGATTTTTGCGCTGGGTTCCATCGTTTCGGCGAGTGCGGGCACTAT GGATCACATGATCGCCGGACGTATCTTGCAGGGCATGGGCGGTGGCGGCTTGATGAGTTTGTCTCAATCTTTGATTGGTG AGTTAGTTCCCATTCGGCAGCGGGCGCGTTTCCAAGGCTATTTTGCCGCTATGTTTACCCTCGCGAGTGTTGGCGGCCCT GTCATTGGCGGTATTGTGGTGCACGCTTATTCGTGGCATTGGCTATTTTGGGCGAATATTCCACTGGCTATGCTAGCGGT ATGGCGACTCAATGGGCTGCATAAGCGCAGCGTTAAACCCGTACGCAACGGCAAGTTTGATTTAGTGGGCGTGGTCTTGT TTCCGACCATTATCACGGCACTGTTATATTGGTTATCTGTTGCGGGGCAAGAGTTTGCTTGGCTTTCTGCGACCAGCTTA GGCTTTGCCGTCTTTGTGGTGGTTGGGATTTTAGGCTTGTTATTGTGGGAGCGGCGATTGGCGAGCCCGTTTCTGCCGTT AGATTTACTGGCGAAGAAGGCCGTGTATATGCCACTACTAACGGCGGCGCTGTTTGCGGCCTGTTTGTTTGCGATGATTT TCTTCCTGCCGATTTATCTGCAGGTGGGTTTACACACCAATCCCGCCAAAACCGGTTTGCTGCTCTTGCCTATGACCTTC GGTATTGTCACTGGCTCGACGATTGCGGGCCGACTGTTAAGTAAAGAGGTCGCGCCTAAGTGGTTGCCGACCTTTGGCAT GGGCTTAGCTTTCATCGGCTTGTTATTGATTAGCTTTGTGCCGCCTAATGCCAATGTAATCGGCGGTTTAGGTGTGTTGG TCGGGATTGGGCTAGGCACTGTTATGCCGAGTGTGCAGCTCGTGGTGCAGAGCGTGTCGGGCAAGGCGCGACTCAGCCAG ATCACGGCTATGGTGTCACTGTGTCGTTCTATGGGCGCTGCTATTGGTACTGCGCTGTTTAGCGTGCTGCTTTATAGTCT GTTGCCACTCACGGGTTCAGAGCTTGGCATCGCTGCGATTAAAACATTGCCGACAGAGGTAGTGCATCACGCCTTCCAAT ATGGATTTATGGCCGCTGCGGGTGTGGCATTGTGTGCCGCGATAGTCGGTTTTTTATCCCCTGCAACGGCATTAAAAGAT CACGATAGCGAAACTGCGCATTAA
Upstream 100 bases:
>100_bases GTTATTGGGCGTCTAAGTATTGGAATGCACGGCGAATTTAGCACATCTTCTTTATGCACTTTCTTTTATGCACTTGGGCT GATGAGTTAGCGGAGACAAT
Downstream 100 bases:
>100_bases GCCAAGATTTGCAGGTGCGCGACCCATTTAAGCCGTGTACTATTTGCGCTGAGCCGTATTTTTGTGGCCTTATTCGATTC CAGGACATAAGCATGACAAC
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MSLEPALSQSDPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWITIGYMLAMAASVPIYGWLGDN FGRAKILMIAIVIFALGSIVSASAGTMDHMIAGRILQGMGGGGLMSLSQSLIGELVPIRQRARFQGYFAAMFTLASVGGP VIGGIVVHAYSWHWLFWANIPLAMLAVWRLNGLHKRSVKPVRNGKFDLVGVVLFPTIITALLYWLSVAGQEFAWLSATSL GFAVFVVVGILGLLLWERRLASPFLPLDLLAKKAVYMPLLTAALFAACLFAMIFFLPIYLQVGLHTNPAKTGLLLLPMTF GIVTGSTIAGRLLSKEVAPKWLPTFGMGLAFIGLLLISFVPPNANVIGGLGVLVGIGLGTVMPSVQLVVQSVSGKARLSQ ITAMVSLCRSMGAAIGTALFSVLLYSLLPLTGSELGIAAIKTLPTEVVHHAFQYGFMAAAGVALCAAIVGFLSPATALKD HDSETAH
Sequences:
>Translated_487_residues MSLEPALSQSDPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWITIGYMLAMAASVPIYGWLGDN FGRAKILMIAIVIFALGSIVSASAGTMDHMIAGRILQGMGGGGLMSLSQSLIGELVPIRQRARFQGYFAAMFTLASVGGP VIGGIVVHAYSWHWLFWANIPLAMLAVWRLNGLHKRSVKPVRNGKFDLVGVVLFPTIITALLYWLSVAGQEFAWLSATSL GFAVFVVVGILGLLLWERRLASPFLPLDLLAKKAVYMPLLTAALFAACLFAMIFFLPIYLQVGLHTNPAKTGLLLLPMTF GIVTGSTIAGRLLSKEVAPKWLPTFGMGLAFIGLLLISFVPPNANVIGGLGVLVGIGLGTVMPSVQLVVQSVSGKARLSQ ITAMVSLCRSMGAAIGTALFSVLLYSLLPLTGSELGIAAIKTLPTEVVHHAFQYGFMAAAGVALCAAIVGFLSPATALKD HDSETAH >Mature_486_residues SLEPALSQSDPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWITIGYMLAMAASVPIYGWLGDNF GRAKILMIAIVIFALGSIVSASAGTMDHMIAGRILQGMGGGGLMSLSQSLIGELVPIRQRARFQGYFAAMFTLASVGGPV IGGIVVHAYSWHWLFWANIPLAMLAVWRLNGLHKRSVKPVRNGKFDLVGVVLFPTIITALLYWLSVAGQEFAWLSATSLG FAVFVVVGILGLLLWERRLASPFLPLDLLAKKAVYMPLLTAALFAACLFAMIFFLPIYLQVGLHTNPAKTGLLLLPMTFG IVTGSTIAGRLLSKEVAPKWLPTFGMGLAFIGLLLISFVPPNANVIGGLGVLVGIGLGTVMPSVQLVVQSVSGKARLSQI TAMVSLCRSMGAAIGTALFSVLLYSLLPLTGSELGIAAIKTLPTEVVHHAFQYGFMAAAGVALCAAIVGFLSPATALKDH DSETAH
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. EmrB family [H]
Homologues:
Organism=Escherichia coli, GI87081983, Length=432, Percent_Identity=29.1666666666667, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1790195, Length=320, Percent_Identity=27.5, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1789042, Length=331, Percent_Identity=27.4924471299094, Blast_Score=114, Evalue=2e-26, Organism=Escherichia coli, GI1788710, Length=319, Percent_Identity=25.3918495297806, Blast_Score=99, Evalue=8e-22, Organism=Escherichia coli, GI1788392, Length=340, Percent_Identity=28.8235294117647, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1788509, Length=168, Percent_Identity=27.3809523809524, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322958, Length=469, Percent_Identity=24.5202558635394, Blast_Score=114, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6323735, Length=326, Percent_Identity=25.7668711656442, Blast_Score=107, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6321663, Length=486, Percent_Identity=23.8683127572016, Blast_Score=101, Evalue=2e-22, Organism=Saccharomyces cerevisiae, GI6325455, Length=463, Percent_Identity=22.8941684665227, Blast_Score=98, Evalue=3e-21, Organism=Saccharomyces cerevisiae, GI6319770, Length=383, Percent_Identity=26.3707571801567, Blast_Score=87, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6324415, Length=422, Percent_Identity=24.4075829383886, Blast_Score=76, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6319783, Length=370, Percent_Identity=24.3243243243243, Blast_Score=73, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6321740, Length=462, Percent_Identity=22.7272727272727, Blast_Score=68, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322959, Length=469, Percent_Identity=22.6012793176972, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6319782, Length=469, Percent_Identity=22.6012793176972, Blast_Score=63, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004638 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001411 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 51439; Mature: 51308
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: PS50850 MFS ; PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLEPALSQSDPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWIT CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH IGYMLAMAASVPIYGWLGDNFGRAKILMIAIVIFALGSIVSASAGTMDHMIAGRILQGMG HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC GGGLMSLSQSLIGELVPIRQRARFQGYFAAMFTLASVGGPVIGGIVVHAYSWHWLFWANI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEECCH PLAMLAVWRLNGLHKRSVKPVRNGKFDLVGVVLFPTIITALLYWLSVAGQEFAWLSATSL HHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GFAVFVVVGILGLLLWERRLASPFLPLDLLAKKAVYMPLLTAALFAACLFAMIFFLPIYL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVGLHTNPAKTGLLLLPMTFGIVTGSTIAGRLLSKEVAPKWLPTFGMGLAFIGLLLISFV HHCCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHC PPNANVIGGLGVLVGIGLGTVMPSVQLVVQSVSGKARLSQITAMVSLCRSMGAAIGTALF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH SVLLYSLLPLTGSELGIAAIKTLPTEVVHHAFQYGFMAAAGVALCAAIVGFLSPATALKD HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHC HDSETAH CCCCCCC >Mature Secondary Structure SLEPALSQSDPLPTSVFLAIFSAVFLPMFLAAVDQTLLATATPAIVEDLGGLRQASWIT CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHH IGYMLAMAASVPIYGWLGDNFGRAKILMIAIVIFALGSIVSASAGTMDHMIAGRILQGMG HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC GGGLMSLSQSLIGELVPIRQRARFQGYFAAMFTLASVGGPVIGGIVVHAYSWHWLFWANI CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEEECCH PLAMLAVWRLNGLHKRSVKPVRNGKFDLVGVVLFPTIITALLYWLSVAGQEFAWLSATSL HHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH GFAVFVVVGILGLLLWERRLASPFLPLDLLAKKAVYMPLLTAALFAACLFAMIFFLPIYL HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QVGLHTNPAKTGLLLLPMTFGIVTGSTIAGRLLSKEVAPKWLPTFGMGLAFIGLLLISFV HHCCCCCCCCCCEEHHHHHHHHHCCHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHC PPNANVIGGLGVLVGIGLGTVMPSVQLVVQSVSGKARLSQITAMVSLCRSMGAAIGTALF CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH SVLLYSLLPLTGSELGIAAIKTLPTEVVHHAFQYGFMAAAGVALCAAIVGFLSPATALKD HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHC HDSETAH CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]