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The map label for this gene is ribB [H]

Identifier: 126176404

GI number: 126176404

Start: 4945010

End: 4945663

Strand: Direct

Name: ribB [H]

Synonym: Sbal_4219

Alternate gene names: 126176404

Gene position: 4945010-4945663 (Clockwise)

Preceding gene: 126176401

Following gene: 126176405

Centisome position: 96.44

GC content: 52.14

Gene sequence:

>654_bases
ATGAATCAGTCTTTACTTGCTCCTTTTGGTACTGCTATCGAACGCGTTGAAGCGGGTCTTAATGCCCTGCGTCAAGGCCA
AGGTGTGTTAGTTGTCGATGACGAAGATAGAGAAAACGAAGGCGATTTAATTTTCGCTGCCGAGACACTGACGAACGCCC
AAATGGCCATGCTCATCCGTGAATGTAGCGGTATTGTTTGCCTGTGTTTACCCGATGAAAAAATCAAAGCCCTCGAACTG
CCTGCTATGGTCGAGCACAACTCGAGCCAATACGGCACGGCATTTACTGTGAGCATTGAAGCAACTGTCGGTGTAACGAC
TGGGGTTTCTGCCGCTGACCGCGTGACCACCATTAAAGCCGCGATTGCCGACAACGCTAAGCCAAGCGATCTCGCTCGCC
CTGGCCATGTGTATCCACTTCGCGCCCAACCGGGCGGCGTATTAACTCGCCGCGGCCACACCGAAGGCACGATCGATTTA
GTGCAACTCGCTGGCTTAAAACCTGCTGGCGTATTGTGTGAAGTCACTAACCCAGACGGTACTATGGCGCGTTTACCCGA
AATTATCGCCTTCGGCGCGCTGCACAATATGCCAGTGCTGACGATTGAAGATATAGTGGTCTACCGTAAATCGCTACTGG
CGAAGGTCGGTTAA

Upstream 100 bases:

>100_bases
ATTGCTACAGCAAAATCGAGCCATTAGGTTTGATTAGGTTGTATTTCTGCACGCCCTGATTCTGGATATTCCAATGTCGT
ATTTTTTAAGGATATTAACC

Downstream 100 bases:

>100_bases
GTCAGACTTCAATGGCCTAAACTTAGGTCATTAATTTAAGACGAAGGGACGTTTCGCTGCGGCAAACGTCCTTTTTATTG
GGCTTTATTTGCAGTCCAAC

Product: 3,4-dihydroxy-2-butanone 4-phosphate synthase

Products: NA

Alternate protein names: DHBP synthase [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MNQSLLAPFGTAIERVEAGLNALRQGQGVLVVDDEDRENEGDLIFAAETLTNAQMAMLIRECSGIVCLCLPDEKIKALEL
PAMVEHNSSQYGTAFTVSIEATVGVTTGVSAADRVTTIKAAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDL
VQLAGLKPAGVLCEVTNPDGTMARLPEIIAFGALHNMPVLTIEDIVVYRKSLLAKVG

Sequences:

>Translated_217_residues
MNQSLLAPFGTAIERVEAGLNALRQGQGVLVVDDEDRENEGDLIFAAETLTNAQMAMLIRECSGIVCLCLPDEKIKALEL
PAMVEHNSSQYGTAFTVSIEATVGVTTGVSAADRVTTIKAAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDL
VQLAGLKPAGVLCEVTNPDGTMARLPEIIAFGALHNMPVLTIEDIVVYRKSLLAKVG
>Mature_217_residues
MNQSLLAPFGTAIERVEAGLNALRQGQGVLVVDDEDRENEGDLIFAAETLTNAQMAMLIRECSGIVCLCLPDEKIKALEL
PAMVEHNSSQYGTAFTVSIEATVGVTTGVSAADRVTTIKAAIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDL
VQLAGLKPAGVLCEVTNPDGTMARLPEIIAFGALHNMPVLTIEDIVVYRKSLLAKVG

Specific function: Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate [H]

COG id: COG0108

COG function: function code H; 3,4-dihydroxy-2-butanone 4-phosphate synthase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DHBP synthase family [H]

Homologues:

Organism=Escherichia coli, GI1789420, Length=211, Percent_Identity=69.6682464454976, Blast_Score=308, Evalue=2e-85,
Organism=Saccharomyces cerevisiae, GI6320695, Length=214, Percent_Identity=41.1214953271028, Blast_Score=169, Evalue=5e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR000422 [H]

Pfam domain/function: PF00926 DHBP_synthase [H]

EC number: =4.1.99.12 [H]

Molecular weight: Translated: 22957; Mature: 22957

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSLLAPFGTAIERVEAGLNALRQGQGVLVVDDEDRENEGDLIFAAETLTNAQMAMLIR
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEHHHCCHHHHHHHH
ECSGIVCLCLPDEKIKALELPAMVEHNSSQYGTAFTVSIEATVGVTTGVSAADRVTTIKA
HCCCEEEEEECCCCCEEEECCHHCCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHEEEE
AIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLVQLAGLKPAGVLCEVTNPDG
ECCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCCEEEEEECCCC
TMARLPEIIAFGALHNMPVLTIEDIVVYRKSLLAKVG
HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQSLLAPFGTAIERVEAGLNALRQGQGVLVVDDEDRENEGDLIFAAETLTNAQMAMLIR
CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEHHHCCHHHHHHHH
ECSGIVCLCLPDEKIKALELPAMVEHNSSQYGTAFTVSIEATVGVTTGVSAADRVTTIKA
HCCCEEEEEECCCCCEEEECCHHCCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHEEEE
AIADNAKPSDLARPGHVYPLRAQPGGVLTRRGHTEGTIDLVQLAGLKPAGVLCEVTNPDG
ECCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEEECCCCCCCEEEEEECCCC
TMARLPEIIAFGALHNMPVLTIEDIVVYRKSLLAKVG
HHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA