Click here to switch to the map view.

The map label for this gene is selU [H]

Identifier: 126176368

GI number: 126176368

Start: 4897057

End: 4898163

Strand: Direct

Name: selU [H]

Synonym: Sbal_4183

Alternate gene names: 126176368

Gene position: 4897057-4898163 (Clockwise)

Preceding gene: 126176367

Following gene: 126176380

Centisome position: 95.51

GC content: 47.52

Gene sequence:

>1107_bases
ATGCCAAACGCGATCGTCGCAGCAGAACAATATCGGGAAATTTTCCTCAATCAACATCCCATCATGGATGTGCGAGCACC
CATAGAGTTTACTCGAGGTGCGTTTCCCAACTCGACCAACTTACCCTTGATGCTGGATAGTGAAAGGGAAAAAGTCGGCA
CTTGTTATAAGCAATCAGGTCAGCAAGCCGCGATTGCATTGGGTCATTCACTGGTTAATGGCCCCATCAAGCAACAGAGA
ATCGAAGCTTGGGCAAGCTATGTGAAAGCCAACCCCAACGCCTACCTTTATTGCTTTCGTGGCGGCTTACGCTCGCAACT
CTCGCAACAATGGCTTAAAGAAGCTGGTGTAGAAGTCCCTTATATTCAGGGTGGCTATAAGGCCATGCGCCAATATCTGA
TTGGCGTGATTGAAGCGGCACCAGCTCAGCAGCCGTTATTGAGTTTGAGCGGGATGACGGGCTGCGGTAAAACCGATTTC
TTATTGCAGCGTAAAGAAGCGGTTGATCTTGAAGGGATAGCTAATCACAGAGGCTCTAGCTTTGGGAAGAATATCGACCC
ACAATCGACGCAGATTAACTTTGAAAATCAGCTTGCCATTGCCTTGCTACAGCACCAAACGAGTGACGCTGCCTGTTTAC
TGCTCGAAGATGAAAGCTTCCTGATTGGGCGTTCGGCGCTGCCGCAGACATTTTACAATGCCATGCAAGCCGCCAATGTC
TTAGTGCTAGAAGAGTCGGACGATGCAAGGCTCGAACGCTTACGCAATGAATATGTGCATAAAATGTATAGTGGCTTCTG
TGAGCGCCTAGGGCCGGAAGCGGGTTTTGCGGCATTTAGCGACTATCTATTGCAAAGTTTAGTGAGCATTCGTAAACGTT
TAGGCGGGAAGCAGCATCAAGAACTGCAAGATTTGATGCAACAAGCACTCGATCAGCAAATCAACCAGAATGACACTTCG
CTGCACTTAGTCTGGATAAACTTGTTATTGCACAAGTATTACGACCCTATGTACCTATACCAATTAGAGAACAAGTCCGA
ACGGGTGCTCTTTAAAGGTTCGCATCAAGCTATGCATGAATGGCTGGATAGCTATCAGACACGATAA

Upstream 100 bases:

>100_bases
AAGCGGAATTGATTGATCTACTCGATGCGCATCACATCGCCCCAATTTGCATTGGATCACTGGAAACACCCACCACTGAA
GTAAATGTGGTGTTGTGCTG

Downstream 100 bases:

>100_bases
ATCACCACCCTAAAATAACCGCGAACATTAGCTTCGCGGTTATCACTTCACTTTATTTCATAATGACATAACGGATTTAA
GACTTACCCAGCAGGCTCGC

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase [H]

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MPNAIVAAEQYREIFLNQHPIMDVRAPIEFTRGAFPNSTNLPLMLDSEREKVGTCYKQSGQQAAIALGHSLVNGPIKQQR
IEAWASYVKANPNAYLYCFRGGLRSQLSQQWLKEAGVEVPYIQGGYKAMRQYLIGVIEAAPAQQPLLSLSGMTGCGKTDF
LLQRKEAVDLEGIANHRGSSFGKNIDPQSTQINFENQLAIALLQHQTSDAACLLLEDESFLIGRSALPQTFYNAMQAANV
LVLEESDDARLERLRNEYVHKMYSGFCERLGPEAGFAAFSDYLLQSLVSIRKRLGGKQHQELQDLMQQALDQQINQNDTS
LHLVWINLLLHKYYDPMYLYQLENKSERVLFKGSHQAMHEWLDSYQTR

Sequences:

>Translated_368_residues
MPNAIVAAEQYREIFLNQHPIMDVRAPIEFTRGAFPNSTNLPLMLDSEREKVGTCYKQSGQQAAIALGHSLVNGPIKQQR
IEAWASYVKANPNAYLYCFRGGLRSQLSQQWLKEAGVEVPYIQGGYKAMRQYLIGVIEAAPAQQPLLSLSGMTGCGKTDF
LLQRKEAVDLEGIANHRGSSFGKNIDPQSTQINFENQLAIALLQHQTSDAACLLLEDESFLIGRSALPQTFYNAMQAANV
LVLEESDDARLERLRNEYVHKMYSGFCERLGPEAGFAAFSDYLLQSLVSIRKRLGGKQHQELQDLMQQALDQQINQNDTS
LHLVWINLLLHKYYDPMYLYQLENKSERVLFKGSHQAMHEWLDSYQTR
>Mature_367_residues
PNAIVAAEQYREIFLNQHPIMDVRAPIEFTRGAFPNSTNLPLMLDSEREKVGTCYKQSGQQAAIALGHSLVNGPIKQQRI
EAWASYVKANPNAYLYCFRGGLRSQLSQQWLKEAGVEVPYIQGGYKAMRQYLIGVIEAAPAQQPLLSLSGMTGCGKTDFL
LQRKEAVDLEGIANHRGSSFGKNIDPQSTQINFENQLAIALLQHQTSDAACLLLEDESFLIGRSALPQTFYNAMQAANVL
VLEESDDARLERLRNEYVHKMYSGFCERLGPEAGFAAFSDYLLQSLVSIRKRLGGKQHQELQDLMQQALDQQINQNDTSL
HLVWINLLLHKYYDPMYLYQLENKSERVLFKGSHQAMHEWLDSYQTR

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA [H]

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1786712, Length=358, Percent_Identity=45.2513966480447, Blast_Score=317, Evalue=7e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR017582 [H]

Pfam domain/function: PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 41680; Mature: 41549

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNAIVAAEQYREIFLNQHPIMDVRAPIEFTRGAFPNSTNLPLMLDSEREKVGTCYKQSG
CCCCHHHHHHHHHHHCCCCCCEEECCCHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHCC
QQAAIALGHSLVNGPIKQQRIEAWASYVKANPNAYLYCFRGGLRSQLSQQWLKEAGVEVP
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCC
YIQGGYKAMRQYLIGVIEAAPAQQPLLSLSGMTGCGKTDFLLQRKEAVDLEGIANHRGSS
EECCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCC
FGKNIDPQSTQINFENQLAIALLQHQTSDAACLLLEDESFLIGRSALPQTFYNAMQAANV
CCCCCCCCCCEECCCHHHHHHHHHHCCCCCEEEEEECCCEEECCHHHHHHHHHHHHHCCE
LVLEESDDARLERLRNEYVHKMYSGFCERLGPEAGFAAFSDYLLQSLVSIRKRLGGKQHQ
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
ELQDLMQQALDQQINQNDTSLHLVWINLLLHKYYDPMYLYQLENKSERVLFKGSHQAMHE
HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCHHHHHH
WLDSYQTR
HHHHHCCC
>Mature Secondary Structure 
PNAIVAAEQYREIFLNQHPIMDVRAPIEFTRGAFPNSTNLPLMLDSEREKVGTCYKQSG
CCCHHHHHHHHHHHCCCCCCEEECCCHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHCC
QQAAIALGHSLVNGPIKQQRIEAWASYVKANPNAYLYCFRGGLRSQLSQQWLKEAGVEVP
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCC
YIQGGYKAMRQYLIGVIEAAPAQQPLLSLSGMTGCGKTDFLLQRKEAVDLEGIANHRGSS
EECCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHCCCCC
FGKNIDPQSTQINFENQLAIALLQHQTSDAACLLLEDESFLIGRSALPQTFYNAMQAANV
CCCCCCCCCCEECCCHHHHHHHHHHCCCCCEEEEEECCCEEECCHHHHHHHHHHHHHCCE
LVLEESDDARLERLRNEYVHKMYSGFCERLGPEAGFAAFSDYLLQSLVSIRKRLGGKQHQ
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
ELQDLMQQALDQQINQNDTSLHLVWINLLLHKYYDPMYLYQLENKSERVLFKGSHQAMHE
HHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCEEEEEECCCCCEEEEECCHHHHHH
WLDSYQTR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA