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The map label for this gene is fdnI [C]

Identifier: 126176327

GI number: 126176327

Start: 4862084

End: 4863067

Strand: Direct

Name: fdnI [C]

Synonym: Sbal_4142

Alternate gene names: 126176327

Gene position: 4862084-4863067 (Clockwise)

Preceding gene: 126176326

Following gene: 126176358

Centisome position: 94.83

GC content: 46.44

Gene sequence:

>984_bases
ATGAACAAATGGTTCAAACACATAGGTTTAGCCATAGCACTGCTATTTAGTGCCGTGTGTATAGCCAATGGTGGTGATGA
ACTGGCGAATCAAGTTCAACAGTCTGATGCCCAAATTTGGGCACAACTGAAGGATGGTGCCACGGGATACACTACCTCCC
AAAGTGAGTTTCATGCTCAACCCATCAATACCTATGATCTACGGGTATTAGAGCTACGTAGCAACTGGTTAGCGCCGGCC
TTAATGGCAGCACTATTTGGTATGATCATTATCTTTGTTTTATTTATCAAGGTGAACGGCATCTCCAAGCTGCACCATGG
TTTTTCAGGCAAGTTAGTGCATCGCTGGTCTAAGTTTGATGTTTCAATCCACTGGTTAGGCGCGATCCCGTGCTTACTGT
TGATTTTAACGGGCTTAACCTTGCTGGCAGGTCGCTTCTTCTTCCAACCTTGGTTGGGCGAAGGTATCTGGGAAGCCATC
GTCTACGGTGCGAAGCAAATCCATGACGTGATGGCGATTCCCTTCATGATAGGTTGGGCATTAATGACCACCCTCTGGGC
GAAAAACCAGCTGCCAAAAATGTACGACGTAAAGTGGTTCTTAGTCGTGGGCGGTTACATTAACTTTGGCCCGTTTAAAG
GTAAGCACCCAGACGCAGGTTTTGCGAACGCCGGTGAGAAAATGTGGTTCTGGGCCTTTGCCCTATTTGGATTAGTGATT
TCGGCCTCAGGCATGTTGTTACTCTTCCCTAACCTATTCGAACCAAGCCGTACATTAAGCTTGATCGCACTCGTGCTGCA
CTCAGTGAGCGCTATCGTGATCTGTGCTTTTTCTATCGTACACATCTTCATGGCAACCGTAATGTCAGAAGGCGGTATGG
AATGTATGGTATCTGGCTACTGCGATGAAAACTGGGCAAGCCAACATCACAACCTGTGGTTTGACGAAATCAAAGCAAAC
GGCTCACTTAAATATAAAGAATAA

Upstream 100 bases:

>100_bases
AAAAACGCGGCTTAGAATTAATTCAAGTCAACAGGATCTGTCCACAGGCTTAGCTTAGCGCCTGCTAAGGCGGGCGCGAC
TAAGTGAGAGAGGATGTATG

Downstream 100 bases:

>100_bases
GACTGAAATCTAGTTGTAGGTATTCAAAAAATACTTAGCCACTAGCAAACCTAAAGCCCCCTACTAGTTAGTACTATTGA
GGGGCTTATATTTGAGCATA

Product: formate dehydrogenase subunit gamma

Products: CO2; NADH

Alternate protein names: Formate Dehydrogenase Cytochrome; Formate Dehydrogenase Subunit Gamma; Formate Dehydrogenase Subunit C; Formate Dehydrogenase Cytochrome B Subunit; Formate Dehydrogenase C Subunit; Formate Dehydrogenase; Formate Dehydrogenase-N; Cytochrome B Subunit Of Formate Dehydrogenase; Formate Dehydrogenase Subunit C FdnI; Cytochrome; Formate Dehydrogenase Cytochrome C Subunit Gamma Subunit; Formate Dehydrogenase N Gamma Subunit

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MNKWFKHIGLAIALLFSAVCIANGGDELANQVQQSDAQIWAQLKDGATGYTTSQSEFHAQPINTYDLRVLELRSNWLAPA
LMAALFGMIIIFVLFIKVNGISKLHHGFSGKLVHRWSKFDVSIHWLGAIPCLLLILTGLTLLAGRFFFQPWLGEGIWEAI
VYGAKQIHDVMAIPFMIGWALMTTLWAKNQLPKMYDVKWFLVVGGYINFGPFKGKHPDAGFANAGEKMWFWAFALFGLVI
SASGMLLLFPNLFEPSRTLSLIALVLHSVSAIVICAFSIVHIFMATVMSEGGMECMVSGYCDENWASQHHNLWFDEIKAN
GSLKYKE

Sequences:

>Translated_327_residues
MNKWFKHIGLAIALLFSAVCIANGGDELANQVQQSDAQIWAQLKDGATGYTTSQSEFHAQPINTYDLRVLELRSNWLAPA
LMAALFGMIIIFVLFIKVNGISKLHHGFSGKLVHRWSKFDVSIHWLGAIPCLLLILTGLTLLAGRFFFQPWLGEGIWEAI
VYGAKQIHDVMAIPFMIGWALMTTLWAKNQLPKMYDVKWFLVVGGYINFGPFKGKHPDAGFANAGEKMWFWAFALFGLVI
SASGMLLLFPNLFEPSRTLSLIALVLHSVSAIVICAFSIVHIFMATVMSEGGMECMVSGYCDENWASQHHNLWFDEIKAN
GSLKYKE
>Mature_327_residues
MNKWFKHIGLAIALLFSAVCIANGGDELANQVQQSDAQIWAQLKDGATGYTTSQSEFHAQPINTYDLRVLELRSNWLAPA
LMAALFGMIIIFVLFIKVNGISKLHHGFSGKLVHRWSKFDVSIHWLGAIPCLLLILTGLTLLAGRFFFQPWLGEGIWEAI
VYGAKQIHDVMAIPFMIGWALMTTLWAKNQLPKMYDVKWFLVVGGYINFGPFKGKHPDAGFANAGEKMWFWAFALFGLVI
SASGMLLLFPNLFEPSRTLSLIALVLHSVSAIVICAFSIVHIFMATVMSEGGMECMVSGYCDENWASQHHNLWFDEIKAN
GSLKYKE

Specific function: Formate Dehydrogenase Allows E. coli To Use Formate As Major Electron Donor During Anaerobic Respiration, When Nitrate Is Used As Electron Acceptor. Subunit Gamma Is The Cytochrome B556(Fdn) Component Of The Formate Dehydrogenase. [C]

COG id: COG2864

COG function: function code C; Cytochrome b subunit of formate dehydrogenase

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787750, Length=225, Percent_Identity=24.4444444444444, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790325, Length=109, Percent_Identity=33.0275229357798, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.2.1.2

Molecular weight: Translated: 36554; Mature: 36554

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKWFKHIGLAIALLFSAVCIANGGDELANQVQQSDAQIWAQLKDGATGYTTSQSEFHAQ
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC
PINTYDLRVLELRSNWLAPALMAALFGMIIIFVLFIKVNGISKLHHGFSGKLVHRWSKFD
CCCCHHHEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHC
VSIHWLGAIPCLLLILTGLTLLAGRFFFQPWLGEGIWEAIVYGAKQIHDVMAIPFMIGWA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMTTLWAKNQLPKMYDVKWFLVVGGYINFGPFKGKHPDAGFANAGEKMWFWAFALFGLVI
HHHHHHHHCCCCCHHCCEEEEEECCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
SASGMLLLFPNLFEPSRTLSLIALVLHSVSAIVICAFSIVHIFMATVMSEGGMECMVSGY
HCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
CDENWASQHHNLWFDEIKANGSLKYKE
CCCCHHHHCCCCCHHHHCCCCCCCCCC
>Mature Secondary Structure
MNKWFKHIGLAIALLFSAVCIANGGDELANQVQQSDAQIWAQLKDGATGYTTSQSEFHAQ
CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCC
PINTYDLRVLELRSNWLAPALMAALFGMIIIFVLFIKVNGISKLHHGFSGKLVHRWSKFD
CCCCHHHEEEEHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHHC
VSIHWLGAIPCLLLILTGLTLLAGRFFFQPWLGEGIWEAIVYGAKQIHDVMAIPFMIGWA
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LMTTLWAKNQLPKMYDVKWFLVVGGYINFGPFKGKHPDAGFANAGEKMWFWAFALFGLVI
HHHHHHHHCCCCCHHCCEEEEEECCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
SASGMLLLFPNLFEPSRTLSLIALVLHSVSAIVICAFSIVHIFMATVMSEGGMECMVSGY
HCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
CDENWASQHHNLWFDEIKANGSLKYKE
CCCCHHHHCCCCCHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: formate; NAD+

Specific reaction: formate + NAD+ = CO2 + NADH

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA