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The map label for this gene is fliR [H]

Identifier: 126176174

GI number: 126176174

Start: 4674058

End: 4674837

Strand: Direct

Name: fliR [H]

Synonym: Sbal_3986

Alternate gene names: 126176174

Gene position: 4674058-4674837 (Clockwise)

Preceding gene: 126176173

Following gene: 126176175

Centisome position: 91.16

GC content: 46.67

Gene sequence:

>780_bases
ATGCTTTCACTCACCTCAACCGAACTCAGCATGTTAATTGGCAGCCTTTGGTGGCCATTCTGCCGGATCATGGGCGCATT
TATGATAATGCCTTTGCTGGGCAATTCTTATGTGCCTGCGACGGTGAGAATTTTCCTTGCCTTAAGTATTGCAGCACTTA
TTGCACCTATGCTCCCACCTGTTCCCCCTGTTGATGCGCTCTCGCTTGGGTCATTGTTTTTAGCCGTTGAGCAACTACTC
ATTGGATTCATGCTCGCACTGTTTTTAACGATTTTAATCCATGTGATGACCATGCTTGGCACTATTATGTCGATGCAGAT
GGGTCTAGCTATGGCGGTGATGAACGATCCCGCTAATGGCGACACCAACCCCATTCTCAGTGAATGGCTACAAATCTTTG
GTACCTTGATTTTTCTGGCTCTTGACGGTCATTTAGTCGGGCTCAACATCATTGTGGATAGCTTTCGTTTATGGCCAATT
GGAAATGGGATTTTTGACTTACCACTAATGGGATTGATTAGTCGAATGGGCTGGCTGTTTGCTGCATCGCTGATGCTCGC
CATACCCGCAGTACTCGCTATGTTAATGGTTAACATCACTTTTGGCGTATTAAGCCGCGCCGCGCCGTCATTAAACATAT
TCTCGCTCGGATTTCCCATGACCTTGCTGATGGGCTTGATTTGCGTCTTCCTTTCGTTAAGCGGCATTCCAACTCGTTAT
AGTGATCTGTGCTTAGACGCATTAACTGCCATGTACCAATTTATCGGGGGGATCTCATGA

Upstream 100 bases:

>100_bases
ACCTTACTTATGGTACTGTTTTCAGGCCATTGGCTCATACAACAGATAAGCGATTTATTTGATAGGCTGTTTATGAATAT
CCCTCATATTATCGGTTGAT

Downstream 100 bases:

>100_bases
GTAAAACGCCCCAACAAGATAAAACTGAAGAAGCTACACCACAGAAAAAGCGTAAAGCGAGAGAAGAAGGCCAAGTTCCG
CGATCTAAAGATCTTGCCTC

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MLSLTSTELSMLIGSLWWPFCRIMGAFMIMPLLGNSYVPATVRIFLALSIAALIAPMLPPVPPVDALSLGSLFLAVEQLL
IGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANGDTNPILSEWLQIFGTLIFLALDGHLVGLNIIVDSFRLWPI
GNGIFDLPLMGLISRMGWLFAASLMLAIPAVLAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLSGIPTRY
SDLCLDALTAMYQFIGGIS

Sequences:

>Translated_259_residues
MLSLTSTELSMLIGSLWWPFCRIMGAFMIMPLLGNSYVPATVRIFLALSIAALIAPMLPPVPPVDALSLGSLFLAVEQLL
IGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANGDTNPILSEWLQIFGTLIFLALDGHLVGLNIIVDSFRLWPI
GNGIFDLPLMGLISRMGWLFAASLMLAIPAVLAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLSGIPTRY
SDLCLDALTAMYQFIGGIS
>Mature_259_residues
MLSLTSTELSMLIGSLWWPFCRIMGAFMIMPLLGNSYVPATVRIFLALSIAALIAPMLPPVPPVDALSLGSLFLAVEQLL
IGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANGDTNPILSEWLQIFGTLIFLALDGHLVGLNIIVDSFRLWPI
GNGIFDLPLMGLISRMGWLFAASLMLAIPAVLAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLSGIPTRY
SDLCLDALTAMYQFIGGIS

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=227, Percent_Identity=34.8017621145374, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27981; Mature: 27981

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
8.5 %Met     (Translated Protein)
9.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
8.5 %Met     (Mature Protein)
9.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLTSTELSMLIGSLWWPFCRIMGAFMIMPLLGNSYVPATVRIFLALSIAALIAPMLPP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
VPPVDALSLGSLFLAVEQLLIGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DTNPILSEWLQIFGTLIFLALDGHLVGLNIIVDSFRLWPIGNGIFDLPLMGLISRMGWLF
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHH
AASLMLAIPAVLAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLSGIPTRY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCHH
SDLCLDALTAMYQFIGGIS
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSLTSTELSMLIGSLWWPFCRIMGAFMIMPLLGNSYVPATVRIFLALSIAALIAPMLPP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
VPPVDALSLGSLFLAVEQLLIGFMLALFLTILIHVMTMLGTIMSMQMGLAMAVMNDPANG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DTNPILSEWLQIFGTLIFLALDGHLVGLNIIVDSFRLWPIGNGIFDLPLMGLISRMGWLF
CCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHH
AASLMLAIPAVLAMLMVNITFGVLSRAAPSLNIFSLGFPMTLLMGLICVFLSLSGIPTRY
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCHH
SDLCLDALTAMYQFIGGIS
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8412685; 7934865 [H]