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The map label for this gene is fliN [H]

Identifier: 126176171

GI number: 126176171

Start: 4672695

End: 4673051

Strand: Direct

Name: fliN [H]

Synonym: Sbal_3983

Alternate gene names: 126176171

Gene position: 4672695-4673051 (Clockwise)

Preceding gene: 126176170

Following gene: 126176172

Centisome position: 91.13

GC content: 43.14

Gene sequence:

>357_bases
TTGGCTGAACAATCTATTTTATCGGATGATGATTTTCTATTAGAGGACGATATTTTCTCTGAAAGCGCATTTTCAAAACC
AGATAACCGTAAGGTGAAAAAAAATAATAACTTTTTCCAACAACTTCCCGTACAGGTCACCCTTGAACTCGCCAGCGCTG
AGATGTCTTTGGGTGAGTTAAATCGTATGGGTGAAGGTGATGTTATTGCACTTGACCGTATGGTGGGTGAGCCGCTGGAT
ATTAGGGTAAATGGAGCCTTACTCGGAAGAGGTGAAGTTGTAGAAGTGGCGGGCAGATATGGCGTACGCTTGCTGGAAAT
AGAGAGCATTACTCTCGATGGGACAAGTAACGAATGA

Upstream 100 bases:

>100_bases
ATCGGAAACACGACTCTATTCCATGCCTCTGTGCATAGTCATGAAGGACAAATGGTAGCGAAATTGACTCAAGATGTTTA
TCAAAATGAGGAGCAGGACA

Downstream 100 bases:

>100_bases
TAGTTCGGGTATTGCTACTGTCTATTTTATTGTTTGCTCCCCAGGCCCTCGCATCGGAAGGACTCACTTTATTCACTCTA
GATAGTGCTCAAGACAGTCA

Product: surface presentation of antigens (SPOA) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MAEQSILSDDDFLLEDDIFSESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLD
IRVNGALLGRGEVVEVAGRYGVRLLEIESITLDGTSNE

Sequences:

>Translated_118_residues
MAEQSILSDDDFLLEDDIFSESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLD
IRVNGALLGRGEVVEVAGRYGVRLLEIESITLDGTSNE
>Mature_117_residues
AEQSILSDDDFLLEDDIFSESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGELNRMGEGDVIALDRMVGEPLDI
RVNGALLGRGEVVEVAGRYGVRLLEIESITLDGTSNE

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=125, Percent_Identity=34.4, Blast_Score=76, Evalue=6e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 13003; Mature: 12872

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEQSILSDDDFLLEDDIFSESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGEL
CCCCCCCCCCCEEECCCCCCCCCCCCCCCCEECCCCCHHHHCCEEEEEEECCCCCCHHHH
NRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEIESITLDGTSNE
HCCCCCCEEEEEHHHCCCEEEEECCEEECCCCEEEECCCCCEEEEEEEEEEECCCCCC
>Mature Secondary Structure 
AEQSILSDDDFLLEDDIFSESAFSKPDNRKVKKNNNFFQQLPVQVTLELASAEMSLGEL
CCCCCCCCCCEEECCCCCCCCCCCCCCCCEECCCCCHHHHCCEEEEEEECCCCCCHHHH
NRMGEGDVIALDRMVGEPLDIRVNGALLGRGEVVEVAGRYGVRLLEIESITLDGTSNE
HCCCCCCEEEEEHHHCCCEEEEECCEEECCCCEEEECCCCCEEEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]