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The map label for this gene is flgD [H]

Identifier: 126176157

GI number: 126176157

Start: 4660772

End: 4661434

Strand: Reverse

Name: flgD [H]

Synonym: Sbal_3969

Alternate gene names: 126176157

Gene position: 4661434-4660772 (Counterclockwise)

Preceding gene: 126176158

Following gene: 126176156

Centisome position: 90.91

GC content: 45.25

Gene sequence:

>663_bases
ATGGAATTGGCCCGCTCTGGTAACAACTCAGTTCAGAATCCTGCAGGTGCATTAGCTGCACCAGGGAATGATGCTGCATC
ATTAAAAAATGAATTCATGACCTTAATGATCGCGCAAATCAAGAACCAAGATCCCACCAAACCGCTTAACAGTGCTGAGT
ATATCTCTCAATTAGCGCAGTTTTCGCAGGTCGAAAGCTTAGAGGGTATGCGGAAGAATCAGTCAAACCAAATGGTCATG
ATGGAAAATTTGGGCATAGTGCAGTCGGCATCTTTAATTGGTAAGAATGCCATGGTGCCGGCGTCTGAGTTTCAACTCGA
TGGTGAAGCTGTTGAAGGCAAAGTGTATTTAGAAAATGCCGCTGAAGGCTTAGATCTTGAAATTATCGATGCGCAAGGTC
AAGTCGTTAGCACCATTCAACTCGGTGCTCAGGATGTTGGTGACGTTCGCTTCTCTATCGATCCTGCTGAGTTGGGATTG
TCTGCTGGCCAATATGAAATCAAAGCTAAGGCGACACTAGGTGAAAATAGTTTAGTCGCGCCAACGTATATTAAGGCACC
GATTGAGAGAGTCCATTTCTCTAGTGCATCCGGCATGATGATGGCTGAAATGGGCCATGGTGTCGGTGTCGTTTCTGTGC
TCAATATTTCTGAAGTTTCGTAA

Upstream 100 bases:

>100_bases
ACATGATGGCTGCAAGTCGTTCATTTGAAACCAGTGTTGAAATCATGAATCGTGCGCGCTCTATGCAGCAAGGTTTATTG
CAGCTAGGGAATAAATAGCA

Downstream 100 bases:

>100_bases
ATTATTTTTATAGGATATTAAGATGTCATTTAACATAGCTTTAAGTGGTTTACAGGCGACAACCCAAGACCTCAATACCA
TCAGTAACAATATTGCTAAC

Product: flagellar hook capping protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MELARSGNNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESLEGMRKNQSNQMVM
MENLGIVQSASLIGKNAMVPASEFQLDGEAVEGKVYLENAAEGLDLEIIDAQGQVVSTIQLGAQDVGDVRFSIDPAELGL
SAGQYEIKAKATLGENSLVAPTYIKAPIERVHFSSASGMMMAEMGHGVGVVSVLNISEVS

Sequences:

>Translated_220_residues
MELARSGNNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESLEGMRKNQSNQMVM
MENLGIVQSASLIGKNAMVPASEFQLDGEAVEGKVYLENAAEGLDLEIIDAQGQVVSTIQLGAQDVGDVRFSIDPAELGL
SAGQYEIKAKATLGENSLVAPTYIKAPIERVHFSSASGMMMAEMGHGVGVVSVLNISEVS
>Mature_220_residues
MELARSGNNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQFSQVESLEGMRKNQSNQMVM
MENLGIVQSASLIGKNAMVPASEFQLDGEAVEGKVYLENAAEGLDLEIIDAQGQVVSTIQLGAQDVGDVRFSIDPAELGL
SAGQYEIKAKATLGENSLVAPTYIKAPIERVHFSSASGMMMAEMGHGVGVVSVLNISEVS

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=167, Percent_Identity=33.5329341317365, Blast_Score=81, Evalue=6e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23247; Mature: 23247

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELARSGNNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQ
CCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
FSQVESLEGMRKNQSNQMVMMENLGIVQSASLIGKNAMVPASEFQLDGEAVEGKVYLENA
HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCCCHHHHEECCCEECCEEEEECC
AEGLDLEIIDAQGQVVSTIQLGAQDVGDVRFSIDPAELGLSAGQYEIKAKATLGENSLVA
CCCCCEEEECCCCCEEEEEHHCCCCCCCEEEEECHHHHCCCCCCEEEEEEEEECCCCCCC
PTYIKAPIERVHFSSASGMMMAEMGHGVGVVSVLNISEVS
CHHHHCCHHHHCCCCCCCEEEECCCCCCCEEEEEEEECCC
>Mature Secondary Structure
MELARSGNNSVQNPAGALAAPGNDAASLKNEFMTLMIAQIKNQDPTKPLNSAEYISQLAQ
CCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
FSQVESLEGMRKNQSNQMVMMENLGIVQSASLIGKNAMVPASEFQLDGEAVEGKVYLENA
HHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHCCCCCCCHHHHEECCCEECCEEEEECC
AEGLDLEIIDAQGQVVSTIQLGAQDVGDVRFSIDPAELGLSAGQYEIKAKATLGENSLVA
CCCCCEEEECCCCCEEEEEHHCCCCCCCEEEEECHHHHCCCCCCEEEEEEEEECCCCCCC
PTYIKAPIERVHFSSASGMMMAEMGHGVGVVSVLNISEVS
CHHHHCCHHHHCCCCCCCEEEECCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]