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The map label for this gene is lafA [H]

Identifier: 126176147

GI number: 126176147

Start: 4651543

End: 4652355

Strand: Reverse

Name: lafA [H]

Synonym: Sbal_3959

Alternate gene names: 126176147

Gene position: 4652355-4651543 (Counterclockwise)

Preceding gene: 126176148

Following gene: 126176146

Centisome position: 90.74

GC content: 42.8

Gene sequence:

>813_bases
ATGTTAGGTGTTCATACTAATTACGCTTCAATCGTTGCGCAGGGTGCTGTAAATAAAAGTAATAACCTATTAACTAATGC
TATGGAGCGTTTGTCTACTGGTTTACGTATCAACAGCGCATCTGATGATGCTGCGGGTCTGCAAATTGCTAACCGCATGA
GCGCTAACGTAAAAGGTATGGAAACAGCTTCACGTAATATTTCTGATGCGACCTCTATGCTGCAAACTGCTGATGGTGCG
TTAGAAGAGTTAACAACCATTGCTAATCGCCAGAAAGAATTGGCGACTCAGGCCTCTAACGGTGTTAACTCAGCAGCTGA
TTTAACTGCACTAAATGATGAGTTTACGCAATTGAATGCCGAAATAACGCGTATTGTAGAAAATACCACTTATGCCGGTA
ATAAATTATTCGATACAGGTGTATTGACCTCTGGTACTGGTGTTAAATTTCAAATTGGCGCCGGAACAACGGAAACAATG
GATGTTAAATTAGGCGCAATTCCTAAAACGGTTACTGGTACTTTAACTGGTGGTACTGCCAATGCTGCCATTGCTCTTGT
GGATACTTTCTTAGCGGCAGTGGGGACTGAACGTTCTACCTTAGGTGCTAACATTAACCGTCTTGGGCATACCGCAGCTA
ACTTAGCTAGCGTAACTGAAAATACTAAAGCGGCAGCTGGTCGTATTATGGATGCCGATTTCGCGGTTGAATCTGCCAAT
ATGACACGCAATCAATTATTAGTTCAAGCGGGTACAACGGTTCTGTCTTCAGCTAACCAAAATACGGGTTTAGTTATGGG
TCTACTGCGCTAA

Upstream 100 bases:

>100_bases
AACCGATAGCGTTTTAGTGATGCGTTATTTATGTCGCTTTAATGAGTTATGCCTGGATTCAGGCCTAACCAAAAAAATCG
TTATTTTCTGGAGAACTACT

Downstream 100 bases:

>100_bases
TTACATTCAGTTCGTCAGTGTTAGTTTTCATGCCAGTGAGCTTAGCTTGCTGGCATTTTTTATGGTGTTTGGTGCATGCC
ATTTTAGTCTGATTTTTACA

Product: flagellin domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLGVHTNYASIVAQGAVNKSNNLLTNAMERLSTGLRINSASDDAAGLQIANRMSANVKGMETASRNISDATSMLQTADGA
LEELTTIANRQKELATQASNGVNSAADLTALNDEFTQLNAEITRIVENTTYAGNKLFDTGVLTSGTGVKFQIGAGTTETM
DVKLGAIPKTVTGTLTGGTANAAIALVDTFLAAVGTERSTLGANINRLGHTAANLASVTENTKAAAGRIMDADFAVESAN
MTRNQLLVQAGTTVLSSANQNTGLVMGLLR

Sequences:

>Translated_270_residues
MLGVHTNYASIVAQGAVNKSNNLLTNAMERLSTGLRINSASDDAAGLQIANRMSANVKGMETASRNISDATSMLQTADGA
LEELTTIANRQKELATQASNGVNSAADLTALNDEFTQLNAEITRIVENTTYAGNKLFDTGVLTSGTGVKFQIGAGTTETM
DVKLGAIPKTVTGTLTGGTANAAIALVDTFLAAVGTERSTLGANINRLGHTAANLASVTENTKAAAGRIMDADFAVESAN
MTRNQLLVQAGTTVLSSANQNTGLVMGLLR
>Mature_270_residues
MLGVHTNYASIVAQGAVNKSNNLLTNAMERLSTGLRINSASDDAAGLQIANRMSANVKGMETASRNISDATSMLQTADGA
LEELTTIANRQKELATQASNGVNSAADLTALNDEFTQLNAEITRIVENTTYAGNKLFDTGVLTSGTGVKFQIGAGTTETM
DVKLGAIPKTVTGTLTGGTANAAIALVDTFLAAVGTERSTLGANINRLGHTAANLASVTENTKAAAGRIMDADFAVESAN
MTRNQLLVQAGTTVLSSANQNTGLVMGLLR

Specific function: Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. Essential for lateral flagellar synthesis and swarming motility [H]

COG id: COG1344

COG function: function code N; Flagellin and related hook-associated proteins

Gene ontology:

Cell location: Secreted. Bacterial flagellum [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial flagellin family [H]

Homologues:

Organism=Escherichia coli, GI1788232, Length=164, Percent_Identity=40.8536585365854, Blast_Score=120, Evalue=1e-28,

Paralogues:

None

Copy number: 200,000-400,000 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001492
- InterPro:   IPR001029 [H]

Pfam domain/function: PF00700 Flagellin_C; PF00669 Flagellin_N [H]

EC number: NA

Molecular weight: Translated: 27840; Mature: 27840

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGVHTNYASIVAQGAVNKSNNLLTNAMERLSTGLRINSASDDAAGLQIANRMSANVKGM
CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCH
ETASRNISDATSMLQTADGALEELTTIANRQKELATQASNGVNSAADLTALNDEFTQLNA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHH
EITRIVENTTYAGNKLFDTGVLTSGTGVKFQIGAGTTETMDVKLGAIPKTVTGTLTGGTA
HHHHHHHCCCCCCCEEEECCCEECCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCC
NAAIALVDTFLAAVGTERSTLGANINRLGHTAANLASVTENTKAAAGRIMDADFAVESAN
HHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCEECCCCEEECCC
MTRNQLLVQAGTTVLSSANQNTGLVMGLLR
CHHHHEEHHHCCHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MLGVHTNYASIVAQGAVNKSNNLLTNAMERLSTGLRINSASDDAAGLQIANRMSANVKGM
CCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCCCH
ETASRNISDATSMLQTADGALEELTTIANRQKELATQASNGVNSAADLTALNDEFTQLNA
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHH
EITRIVENTTYAGNKLFDTGVLTSGTGVKFQIGAGTTETMDVKLGAIPKTVTGTLTGGTA
HHHHHHHCCCCCCCEEEECCCEECCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCC
NAAIALVDTFLAAVGTERSTLGANINRLGHTAANLASVTENTKAAAGRIMDADFAVESAN
HHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCHHHHHCCEECCCCEEECCC
MTRNQLLVQAGTTVLSSANQNTGLVMGLLR
CHHHHEEHHHCCHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8501040; 12620739 [H]