Click here to switch to the map view.

The map label for this gene is lafU [H]

Identifier: 126176136

GI number: 126176136

Start: 4640837

End: 4641757

Strand: Reverse

Name: lafU [H]

Synonym: Sbal_3946

Alternate gene names: 126176136

Gene position: 4641757-4640837 (Counterclockwise)

Preceding gene: 126176137

Following gene: 126176133

Centisome position: 90.53

GC content: 44.19

Gene sequence:

>921_bases
ATGCTCCATAAAAATGAGCCGATTATTATCAAGCGGCGAAAACGAGGAAAGCGTAATCATGGTCATGGTGGTGCGTGGAA
AGTCGCTTTTGCCGATTTCACGCTTGCTATGATGGCGCTCTTTATGGTGCTGTGGATCATGCAAATTGCAGATCAAAAAG
AGCGAACCATGATAGTGCAGTACTTACGTGGAGATATGAATCCAACCGGCCCAATTAATCCATTTGAGTTAAGTCAGTCA
TCTTCGATTATTGATTTAGAAGGCAATATGTCTATTGCACCTCCAATCATACCGTCTAGTTCAATGCCCAGAGGCGGGGA
GTCGGAAGGTTTAGAGGAAGGCACATTGATCCCTGGGCAATTTGATACACAAGCACAGTTAACGGTATTAGCTAGGGAAT
TGAATCGAGTCGTGCAAAACTCGAGCATGGCTGAAAATATTGCCGTGACTATTGTGCCTCAAGGCATACGCATCTTAATT
CACGATAATGTGAATCAATTTATGTTTACGCGAGGTAGTGCGCAGATGCAGCCCTATTTTGAAGAGTTGCTCTTATCTTT
AGGGCCGATTTTAAAAAATGTCACCAACAGCATGGTCATTTCGGGTCATACCGATTCAACACCCTATGCTGGCAATTTAT
TTACTAATTGGGAATTATCTAGCGAGAGGGCACTTTTGGCGCGTAGAGTTTTAGAGCGTGGCGGGGTTAAACGTGACCAA
GTTATCCAAGTTACTGGGATGGCAGATCAGATCCCTTATATCGCGACTGACACTGCTGCAGCTGCAAATCGTCGTATAGA
GGCCTTAATATTAACGTCCTCTGCTGAGCAGTTATTAAGAGGTATGATTGGTGCTCCTAGCGATACTGCCCCAAAAGGCG
TGACTATCAACGAAATAAAGCGTCAAGCAATCACTCAATAG

Upstream 100 bases:

>100_bases
CACCAATGATGGCTATTGATGCGGGACGGAAACAAATTCAAAGTGAAAATCGTCCTTCATTTATAGAATTAGAACGTTGG
ATGGAAGGGCAGAAAAGCTA

Downstream 100 bases:

>100_bases
TGTTAATACCTGTCCTCATTTTTTAGGGATGACTATGAATCTGTATGAAGAGTTTGTACATTCTGAGGATGACGTTGAAG
CGACCCCTGAGTATCAGATT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLHKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMNPTGPINPFELSQS
SSIIDLEGNMSIAPPIIPSSSMPRGGESEGLEEGTLIPGQFDTQAQLTVLARELNRVVQNSSMAENIAVTIVPQGIRILI
HDNVNQFMFTRGSAQMQPYFEELLLSLGPILKNVTNSMVISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQ
VIQVTGMADQIPYIATDTAAAANRRIEALILTSSAEQLLRGMIGAPSDTAPKGVTINEIKRQAITQ

Sequences:

>Translated_306_residues
MLHKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMNPTGPINPFELSQS
SSIIDLEGNMSIAPPIIPSSSMPRGGESEGLEEGTLIPGQFDTQAQLTVLARELNRVVQNSSMAENIAVTIVPQGIRILI
HDNVNQFMFTRGSAQMQPYFEELLLSLGPILKNVTNSMVISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQ
VIQVTGMADQIPYIATDTAAAANRRIEALILTSSAEQLLRGMIGAPSDTAPKGVTINEIKRQAITQ
>Mature_306_residues
MLHKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQYLRGDMNPTGPINPFELSQS
SSIIDLEGNMSIAPPIIPSSSMPRGGESEGLEEGTLIPGQFDTQAQLTVLARELNRVVQNSSMAENIAVTIVPQGIRILI
HDNVNQFMFTRGSAQMQPYFEELLLSLGPILKNVTNSMVISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQ
VIQVTGMADQIPYIATDTAAAANRRIEALILTSSAEQLLRGMIGAPSDTAPKGVTINEIKRQAITQ

Specific function: Probable integral membrane protein required for the rotation of the flagellar motor. Might be a linker that fastens the torque-generating machinery to the cell wall [H]

COG id: COG1360

COG function: function code N; Flagellar motor protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1788198, Length=293, Percent_Identity=31.3993174061433, Blast_Score=150, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 33722; Mature: 33722

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQ
CCCCCCCEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
YLRGDMNPTGPINPFELSQSSSIIDLEGNMSIAPPIIPSSSMPRGGESEGLEEGTLIPGQ
HHHCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
FDTQAQLTVLARELNRVVQNSSMAENIAVTIVPQGIRILIHDNVNQFMFTRGSAQMQPYF
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCHHH
EELLLSLGPILKNVTNSMVISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQ
HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCC
VIQVTGMADQIPYIATDTAAAANRRIEALILTSSAEQLLRGMIGAPSDTAPKGVTINEIK
EEEEECCCCCCCEEECCHHHHHCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHH
RQAITQ
HHHCCC
>Mature Secondary Structure
MLHKNEPIIIKRRKRGKRNHGHGGAWKVAFADFTLAMMALFMVLWIMQIADQKERTMIVQ
CCCCCCCEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
YLRGDMNPTGPINPFELSQSSSIIDLEGNMSIAPPIIPSSSMPRGGESEGLEEGTLIPGQ
HHHCCCCCCCCCCCCCCCCCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
FDTQAQLTVLARELNRVVQNSSMAENIAVTIVPQGIRILIHDNVNQFMFTRGSAQMQPYF
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCCHHH
EELLLSLGPILKNVTNSMVISGHTDSTPYAGNLFTNWELSSERALLARRVLERGGVKRDQ
HHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCC
VIQVTGMADQIPYIATDTAAAANRRIEALILTSSAEQLLRGMIGAPSDTAPKGVTINEIK
EEEEECCCCCCCEEECCHHHHHCCCEEEEEEECCHHHHHHHHCCCCCCCCCCCCCHHHHH
RQAITQ
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12620739; 8501040 [H]