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The map label for this gene is rraA [H]

Identifier: 126176083

GI number: 126176083

Start: 4571122

End: 4571607

Strand: Direct

Name: rraA [H]

Synonym: Sbal_3893

Alternate gene names: 126176083

Gene position: 4571122-4571607 (Clockwise)

Preceding gene: 126176077

Following gene: 126176084

Centisome position: 89.15

GC content: 46.71

Gene sequence:

>486_bases
ATGGAATACAACACCTCAGAATTATGTGACATGTACTTAGATGTCGTAGATGTAGTCGAGCCCATGTTCAGTAACTACGG
TGGTTGTAGCTCTTTTGGCGGTTCTATTAGCACCATCAAGTGCTTTGAAGACAACGGCCTAATCACCGAAGTCCTACAAG
AGGATGGTCAAGGTAAAGTCTTACTCGTTGATGGCGGTGGCTCATTACGCCGTGCGCTGATCGATGGTGCTATCGCTGAA
CTTGCGGTTAGCAACAACTGGGAAGGCATTATCGTTTACGGTTCTGTACGCGATGTGGATGCATTGGAAGAGTTAGACAT
TGGTATTCAAGCCCTTGCCTCAATTCCAGTGGGTGCTGATGGCAATTCAGTGGGCGAAGTGGAAATTCCGGTCAATTTTG
GCGGTGTGACCTTCTTACCCGGCGATCACATTTATGCTGATAACACAGGTGTGATTTTATCACCTGAACCACTCGACATT
GAGTAA

Upstream 100 bases:

>100_bases
ACAATACCGTGATTGATAACACTTTTCTTTTCAAGAATCCCTTTTATACTGGCGTAAACTCGCTAAACTGTACGCAACGC
GGATCAATAGGAGTGTAAAT

Downstream 100 bases:

>100_bases
TCTCACTGTTCAGCCAAGAAAGCCAGCTAAGCTGGCTTTTTTATTCACTATTTTCAGCGTTTCCCCATTGAATCCTCGCG
CCACACTGGCCACAATAGCT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MEYNTSELCDMYLDVVDVVEPMFSNYGGCSSFGGSISTIKCFEDNGLITEVLQEDGQGKVLLVDGGGSLRRALIDGAIAE
LAVSNNWEGIIVYGSVRDVDALEELDIGIQALASIPVGADGNSVGEVEIPVNFGGVTFLPGDHIYADNTGVILSPEPLDI
E

Sequences:

>Translated_161_residues
MEYNTSELCDMYLDVVDVVEPMFSNYGGCSSFGGSISTIKCFEDNGLITEVLQEDGQGKVLLVDGGGSLRRALIDGAIAE
LAVSNNWEGIIVYGSVRDVDALEELDIGIQALASIPVGADGNSVGEVEIPVNFGGVTFLPGDHIYADNTGVILSPEPLDI
E
>Mature_161_residues
MEYNTSELCDMYLDVVDVVEPMFSNYGGCSSFGGSISTIKCFEDNGLITEVLQEDGQGKVLLVDGGGSLRRALIDGAIAE
LAVSNNWEGIIVYGSVRDVDALEELDIGIQALASIPVGADGNSVGEVEIPVNFGGVTFLPGDHIYADNTGVILSPEPLDI
E

Specific function: Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=161, Percent_Identity=66.4596273291926, Blast_Score=234, Evalue=3e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR014339
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 16975; Mature: 16975

Theoretical pI: Translated: 3.48; Mature: 3.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYNTSELCDMYLDVVDVVEPMFSNYGGCSSFGGSISTIKCFEDNGLITEVLQEDGQGKV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCE
LLVDGGGSLRRALIDGAIAELAVSNNWEGIIVYGSVRDVDALEELDIGIQALASIPVGAD
EEEECCCHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
GNSVGEVEIPVNFGGVTFLPGDHIYADNTGVILSPEPLDIE
CCCCCEEEEEEECCCEEECCCCEEEECCCCEEECCCCCCCC
>Mature Secondary Structure
MEYNTSELCDMYLDVVDVVEPMFSNYGGCSSFGGSISTIKCFEDNGLITEVLQEDGQGKV
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCE
LLVDGGGSLRRALIDGAIAELAVSNNWEGIIVYGSVRDVDALEELDIGIQALASIPVGAD
EEEECCCHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCC
GNSVGEVEIPVNFGGVTFLPGDHIYADNTGVILSPEPLDIE
CCCCCEEEEEEECCCEEECCCCEEEECCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]