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The map label for this gene is ybbK [C]

Identifier: 126176039

GI number: 126176039

Start: 4522753

End: 4523691

Strand: Reverse

Name: ybbK [C]

Synonym: Sbal_3848

Alternate gene names: 126176039

Gene position: 4523691-4522753 (Counterclockwise)

Preceding gene: 126176040

Following gene: 126176034

Centisome position: 88.23

GC content: 46.75

Gene sequence:

>939_bases
ATGAATATTCCATTAGATACAGATTTGATTGTGATGGCAATTTGGGGACTGATTTTTGCCATTTTCGTGATTAAGCTTTT
CCAATCGATCCGCCTAGTACCCACTAAGTCGGCTTATATTGTTGAGCGTTTAGGTAAGTACCACAGCACCTTAGATGCAG
GTTTCCATACCTTGATCCCCTTTGTGGATAAAGTCGCTTTCATTCATGATTTGAAAGAAGAGACCATCGATGTACCGCCA
CAGGAGTGTTTTTCGAGCGACGAAGTTAACGTTGAAGTGGACGGGGTGATTTATATCTCTGTGACCGACCCAGTCAAAGC
CAGTTACGGTATTACCGATTATCGCTATGCAGCTATCCAGCTGGCACAAACCACGACGCGATCTGTTATCGGTACGCTGG
ACCTTGACCGCACTTTCGAAGAGCGTGATGTGATTTCTGCCAAGGTCGTGCAGGTATTAGATCAAGCGGGTGCCCTGTGG
GGAATACGTGTGCATCGTTATGAGATTAAAAATATCACCCCACCTGAAACCGTTAAAAATGCCATGGAAATGCAAGTGAA
TGCTGAGCGTGAGCGCCGGGCATTATTGGCTAAGAGTGAAGGCGACAAACAGAGCAAGATTAACCGTTCAGAGGGTGTTA
AAGCTGAGACGGTAAACCGCTCTGAAGGTGAGATGCAGCGCCGGATTAACGAAGCTGAAGGTAAGGCTGAGGAAATTTTA
ACTATTTCCCGTGCGACGGCGGAATCGATCGAACGTCTTGCCACAGTTATTGCTGCGCCGGGTGGCCACAATGCCTTGCG
GATGCAACTTGGTGAACAGTACTTTAAACAGCTCGATGGCTTAAGCCAGAAGAATAGCCGAGTGGTATTGCCGGGTAATA
TGGTGGATTTCGATTACTGGATGAATAGCATAGGCTTAACGGAAGAAAAACCGAGCTAA

Upstream 100 bases:

>100_bases
TCCCCGCTGAAATGGCGAAACTTGAAGGTTTCTTCGAAGGCATGGAGCAAGTTACTCAGACTGTGAGTGGCCAGAATAAT
AGTGGCAAAGGAGCGCGATA

Downstream 100 bases:

>100_bases
GGCTGTGTTTAACATCTGAAACTAGCGAGATCATTAAGGTCAAATACTCAGGTATTTGGCCTTATTTTTTGGCTGTAATT
GAATAATGTATGTAGTGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MNIPLDTDLIVMAIWGLIFAIFVIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHTLIPFVDKVAFIHDLKEETIDVPP
QECFSSDEVNVEVDGVIYISVTDPVKASYGITDYRYAAIQLAQTTTRSVIGTLDLDRTFEERDVISAKVVQVLDQAGALW
GIRVHRYEIKNITPPETVKNAMEMQVNAERERRALLAKSEGDKQSKINRSEGVKAETVNRSEGEMQRRINEAEGKAEEIL
TISRATAESIERLATVIAAPGGHNALRMQLGEQYFKQLDGLSQKNSRVVLPGNMVDFDYWMNSIGLTEEKPS

Sequences:

>Translated_312_residues
MNIPLDTDLIVMAIWGLIFAIFVIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHTLIPFVDKVAFIHDLKEETIDVPP
QECFSSDEVNVEVDGVIYISVTDPVKASYGITDYRYAAIQLAQTTTRSVIGTLDLDRTFEERDVISAKVVQVLDQAGALW
GIRVHRYEIKNITPPETVKNAMEMQVNAERERRALLAKSEGDKQSKINRSEGVKAETVNRSEGEMQRRINEAEGKAEEIL
TISRATAESIERLATVIAAPGGHNALRMQLGEQYFKQLDGLSQKNSRVVLPGNMVDFDYWMNSIGLTEEKPS
>Mature_312_residues
MNIPLDTDLIVMAIWGLIFAIFVIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHTLIPFVDKVAFIHDLKEETIDVPP
QECFSSDEVNVEVDGVIYISVTDPVKASYGITDYRYAAIQLAQTTTRSVIGTLDLDRTFEERDVISAKVVQVLDQAGALW
GIRVHRYEIKNITPPETVKNAMEMQVNAERERRALLAKSEGDKQSKINRSEGVKAETVNRSEGEMQRRINEAEGKAEEIL
TISRATAESIERLATVIAAPGGHNALRMQLGEQYFKQLDGLSQKNSRVVLPGNMVDFDYWMNSIGLTEEKPS

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=267, Percent_Identity=41.9475655430712, Blast_Score=218, Evalue=4e-57,
Organism=Homo sapiens, GI221316744, Length=212, Percent_Identity=31.6037735849057, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI21686995, Length=212, Percent_Identity=31.6037735849057, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI38016911, Length=170, Percent_Identity=32.3529411764706, Blast_Score=92, Evalue=5e-19,
Organism=Escherichia coli, GI1786697, Length=275, Percent_Identity=33.0909090909091, Blast_Score=172, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI32564147, Length=270, Percent_Identity=40.3703703703704, Blast_Score=230, Evalue=9e-61,
Organism=Caenorhabditis elegans, GI17569493, Length=224, Percent_Identity=32.5892857142857, Blast_Score=115, Evalue=4e-26,
Organism=Caenorhabditis elegans, GI193209764, Length=224, Percent_Identity=32.5892857142857, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI71989948, Length=216, Percent_Identity=32.8703703703704, Blast_Score=107, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI71989955, Length=170, Percent_Identity=35.2941176470588, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17569497, Length=194, Percent_Identity=29.8969072164948, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI193210507, Length=216, Percent_Identity=30.0925925925926, Blast_Score=91, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17570161, Length=216, Percent_Identity=30.0925925925926, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17569499, Length=222, Percent_Identity=30.1801801801802, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI32566490, Length=216, Percent_Identity=27.7777777777778, Blast_Score=87, Evalue=8e-18,
Organism=Caenorhabditis elegans, GI25153583, Length=214, Percent_Identity=30.8411214953271, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI71987612, Length=216, Percent_Identity=30.5555555555556, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71987621, Length=216, Percent_Identity=30.5555555555556, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17570459, Length=222, Percent_Identity=28.3783783783784, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71989963, Length=135, Percent_Identity=34.8148148148148, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI45550506, Length=270, Percent_Identity=40, Blast_Score=218, Evalue=3e-57,
Organism=Drosophila melanogaster, GI45556022, Length=209, Percent_Identity=33.9712918660287, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI21356845, Length=195, Percent_Identity=25.1282051282051, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI28573263, Length=208, Percent_Identity=28.3653846153846, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI18860517, Length=214, Percent_Identity=31.7757009345794, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI281361631, Length=195, Percent_Identity=26.6666666666667, Blast_Score=92, Evalue=6e-19,
Organism=Drosophila melanogaster, GI281361633, Length=195, Percent_Identity=26.6666666666667, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI281365664, Length=222, Percent_Identity=31.0810810810811, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI62484448, Length=222, Percent_Identity=31.0810810810811, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI62484274, Length=222, Percent_Identity=31.0810810810811, Blast_Score=91, Evalue=9e-19,
Organism=Drosophila melanogaster, GI24657857, Length=222, Percent_Identity=31.0810810810811, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281361635, Length=137, Percent_Identity=27.007299270073, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 34990; Mature: 34990

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIPLDTDLIVMAIWGLIFAIFVIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHTLIP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVDKVAFIHDLKEETIDVPPQECFSSDEVNVEVDGVIYISVTDPVKASYGITDYRYAAIQ
HHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEECEEEEEEECCCCCCCCCCCHHHHHHHH
LAQTTTRSVIGTLDLDRTFEERDVISAKVVQVLDQAGALWGIRVHRYEIKNITPPETVKN
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHH
AMEMQVNAERERRALLAKSEGDKQSKINRSEGVKAETVNRSEGEMQRRINEAEGKAEEIL
HHHHHHCHHHHHHHHHHCCCCCHHHHCCHHCCCEEEECCCCHHHHHHHHHHHCCCHHHHH
TISRATAESIERLATVIAAPGGHNALRMQLGEQYFKQLDGLSQKNSRVVLPGNMVDFDYW
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEHHHH
MNSIGLTEEKPS
HHHCCCCCCCCC
>Mature Secondary Structure
MNIPLDTDLIVMAIWGLIFAIFVIKLFQSIRLVPTKSAYIVERLGKYHSTLDAGFHTLIP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FVDKVAFIHDLKEETIDVPPQECFSSDEVNVEVDGVIYISVTDPVKASYGITDYRYAAIQ
HHHHHHHHHHHHHHHCCCCHHHHCCCCCCEEEECEEEEEEECCCCCCCCCCCHHHHHHHH
LAQTTTRSVIGTLDLDRTFEERDVISAKVVQVLDQAGALWGIRVHRYEIKNITPPETVKN
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCHHHHHH
AMEMQVNAERERRALLAKSEGDKQSKINRSEGVKAETVNRSEGEMQRRINEAEGKAEEIL
HHHHHHCHHHHHHHHHHCCCCCHHHHCCHHCCCEEEECCCCHHHHHHHHHHHCCCHHHHH
TISRATAESIERLATVIAAPGGHNALRMQLGEQYFKQLDGLSQKNSRVVLPGNMVDFDYW
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEEHHHH
MNSIGLTEEKPS
HHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]