Click here to switch to the map view.

The map label for this gene is hlyB [H]

Identifier: 126175966

GI number: 126175966

Start: 4428593

End: 4430494

Strand: Direct

Name: hlyB [H]

Synonym: Sbal_3773

Alternate gene names: 126175966

Gene position: 4428593-4430494 (Clockwise)

Preceding gene: 126175957

Following gene: 126175970

Centisome position: 86.37

GC content: 47.9

Gene sequence:

>1902_bases
GTGAATTTAAAAATTAGTACGAGGATTGTGGTTGGGATATGTTTATTACTGTTGGCCATGATGAGCTTTATCATGCTGCT
AGTCCTGTCGGAATTCAGCAGTCAGGTGAAAGAATCTGAGCAAAGAGAACTGCATAAACTGTACGAAACTGCTGTAGCCA
ACATAGCCTCATCCGGTAAACTCGCACAGGCCATGGCAACGATAGTTTCACTGACGCCAGAGATCCAAAGTAACTTCGCC
GAACGGGATCGCCCAGCACTCAAAGACCGAACTCTGCCGCTGTTTGCCAAGCTTAAGCAAGATTTCAACGTACAACAATT
TCAGTTTCATACGCCGCCAGCAACCTCTTTTTTACGATTACATCGCCCCGAAAAATTCGGTGATGATCTCACTGCAATTC
GTAAAACGATTGTGGAAACCAACACCACAAAACAGCCCTTAAACGGTTTGGAATATGGTGTTGAAGGTTTAGGGATTCGC
GGTTTAGTACCCATGGGTTATCAAGGCCAACACACAGGCTCAGTGGAATTTGGTATGTCCTTTGGACAACCTTTCTTCGA
CAGTTTTAAAGATGCTTATCAAGCTGAAATCGCATTATTGTTGCCCAATGGCGCGGATTTTAAAGCATTTGGCGCCACGT
TCACGCCCGATATTCAGGCCATAAGTGAACTCAATAGCGTGATGCAAGGCAACGAAGTTATTCGCACTATTAGCTTAGAG
GGCAAAACCTTCGCTTTGTATCGCCACGCCATAAAAGATTACTCGGGACAAGTCTTCGGGGTACTGGATATTGCGATGGA
CAGAAGCCATTCAGAGCAAGTCATGGCGGATATTCGCCTTAAGTTGATCCTCATCGGTTTCGCTGCAATGTTAATCGGCA
CTGCCATTGCTTGGTTTATTGCTAAGGGCATTACCCGCCCGATAGCAGAAACAACCCAAGCCATGAATGACATCGCCGAA
GGCGAAGGCGATTTAACCCGTCGAATTACCATAACGAGTAAAGATGAAATCGCCGAGTTAGCGCAGGCATTTAACCGTTT
TGTGGAGAAAATCCACCACACAGTAACTCAAGTGTCTGATGCCACGAGTTTACTCGCAACCTCAGCGGAAGAGATGTCGG
GCATTACCCACGAAACTCAATCGATGGCCAATCGTCAGAATCTTGAAACCGAACAAGTCGCCACCGCAATGAATGAAATG
GCCGCCACTGTTCAAGAGGTTGCCCACAATGCGACCGATGCCGCGGATGCTGCCAATCACGCCAATGAGTCAACCGAACA
AGGCAAACTCGTAGTGCAAAAAGTCGTCGCGACGATTGCTGTATTAGCGGAAGAAACCGCCGCAGCCGCCAATGCCATTA
ATGAACTCGAACGTAATACTGCCGAAATTGATTCTGTATTAGTTGTGATCCGCAATATTACCGAACAGACCAACTTGCTG
GCGCTTAATGCCGCAATTGAGGCCGCCAGAGCCGGTGAGCAAGGACGAGGATTCGCCGTGGTTGCCGATGAAGTTCGCAC
CCTTGCGACTCGCACTCAAGCTTCAACCACAGAAATTCAAAAAATGATTGAAGCGCTACAGCTTAAAGCCAAATCTACCG
TTTCGGCGATGGAAACCAGTTCACGCACAACTCAAAGCTGTGTTGCCCAAGTTAATCAAGCGGGTGAAGAACTCGTGGCC
ATCACCCAAGCGGTTTCGACCATTAGCCAGATGAACATCCAGATCGCCAGCGCGGCAAATGAGCAATGTGCTGTTTCCGC
AGAAATTAACAAAAATATTAATAACATCAACGATATTGCCACGACGACAACCAATAGTGCGGTGCACACTGCGCGGGCGG
GTGACGAACTTGCCCAGCTTGCGGCTCGCCTGCAACTGCTACTGGCACAGTTTAGGATCTAA

Upstream 100 bases:

>100_bases
AATCCAAAAGGCTGGCGCCATCTCAAATATAGTCAGCCGTATCTCTATAATATTAAAAAGATAAATCAGACTGATGAAGT
GAACTGGGAGGTTGGCTTTG

Downstream 100 bases:

>100_bases
TACCTACACCCACTACCACAAAGCAAAACGCCGCATTATCTGCGGCGTTTTTATTGGTTTATGTTGTTGATGTTTTACTT
AGGGCGCACACCTAACGTAT

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 633; Mature: 633

Protein sequence:

>633_residues
MNLKISTRIVVGICLLLLAMMSFIMLLVLSEFSSQVKESEQRELHKLYETAVANIASSGKLAQAMATIVSLTPEIQSNFA
ERDRPALKDRTLPLFAKLKQDFNVQQFQFHTPPATSFLRLHRPEKFGDDLTAIRKTIVETNTTKQPLNGLEYGVEGLGIR
GLVPMGYQGQHTGSVEFGMSFGQPFFDSFKDAYQAEIALLLPNGADFKAFGATFTPDIQAISELNSVMQGNEVIRTISLE
GKTFALYRHAIKDYSGQVFGVLDIAMDRSHSEQVMADIRLKLILIGFAAMLIGTAIAWFIAKGITRPIAETTQAMNDIAE
GEGDLTRRITITSKDEIAELAQAFNRFVEKIHHTVTQVSDATSLLATSAEEMSGITHETQSMANRQNLETEQVATAMNEM
AATVQEVAHNATDAADAANHANESTEQGKLVVQKVVATIAVLAEETAAAANAINELERNTAEIDSVLVVIRNITEQTNLL
ALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTTEIQKMIEALQLKAKSTVSAMETSSRTTQSCVAQVNQAGEELVA
ITQAVSTISQMNIQIASAANEQCAVSAEINKNINNINDIATTTTNSAVHTARAGDELAQLAARLQLLLAQFRI

Sequences:

>Translated_633_residues
MNLKISTRIVVGICLLLLAMMSFIMLLVLSEFSSQVKESEQRELHKLYETAVANIASSGKLAQAMATIVSLTPEIQSNFA
ERDRPALKDRTLPLFAKLKQDFNVQQFQFHTPPATSFLRLHRPEKFGDDLTAIRKTIVETNTTKQPLNGLEYGVEGLGIR
GLVPMGYQGQHTGSVEFGMSFGQPFFDSFKDAYQAEIALLLPNGADFKAFGATFTPDIQAISELNSVMQGNEVIRTISLE
GKTFALYRHAIKDYSGQVFGVLDIAMDRSHSEQVMADIRLKLILIGFAAMLIGTAIAWFIAKGITRPIAETTQAMNDIAE
GEGDLTRRITITSKDEIAELAQAFNRFVEKIHHTVTQVSDATSLLATSAEEMSGITHETQSMANRQNLETEQVATAMNEM
AATVQEVAHNATDAADAANHANESTEQGKLVVQKVVATIAVLAEETAAAANAINELERNTAEIDSVLVVIRNITEQTNLL
ALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTTEIQKMIEALQLKAKSTVSAMETSSRTTQSCVAQVNQAGEELVA
ITQAVSTISQMNIQIASAANEQCAVSAEINKNINNINDIATTTTNSAVHTARAGDELAQLAARLQLLLAQFRI
>Mature_633_residues
MNLKISTRIVVGICLLLLAMMSFIMLLVLSEFSSQVKESEQRELHKLYETAVANIASSGKLAQAMATIVSLTPEIQSNFA
ERDRPALKDRTLPLFAKLKQDFNVQQFQFHTPPATSFLRLHRPEKFGDDLTAIRKTIVETNTTKQPLNGLEYGVEGLGIR
GLVPMGYQGQHTGSVEFGMSFGQPFFDSFKDAYQAEIALLLPNGADFKAFGATFTPDIQAISELNSVMQGNEVIRTISLE
GKTFALYRHAIKDYSGQVFGVLDIAMDRSHSEQVMADIRLKLILIGFAAMLIGTAIAWFIAKGITRPIAETTQAMNDIAE
GEGDLTRRITITSKDEIAELAQAFNRFVEKIHHTVTQVSDATSLLATSAEEMSGITHETQSMANRQNLETEQVATAMNEM
AATVQEVAHNATDAADAANHANESTEQGKLVVQKVVATIAVLAEETAAAANAINELERNTAEIDSVLVVIRNITEQTNLL
ALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTTEIQKMIEALQLKAKSTVSAMETSSRTTQSCVAQVNQAGEELVA
ITQAVSTISQMNIQIASAANEQCAVSAEINKNINNINDIATTTTNSAVHTARAGDELAQLAARLQLLLAQFRI

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1788195, Length=287, Percent_Identity=33.4494773519164, Blast_Score=132, Evalue=6e-32,
Organism=Escherichia coli, GI2367378, Length=304, Percent_Identity=31.9078947368421, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787690, Length=354, Percent_Identity=29.6610169491525, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1788194, Length=359, Percent_Identity=28.6908077994429, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1789453, Length=340, Percent_Identity=27.6470588235294, Blast_Score=103, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 68620; Mature: 68620

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLKISTRIVVGICLLLLAMMSFIMLLVLSEFSSQVKESEQRELHKLYETAVANIASSGK
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LAQAMATIVSLTPEIQSNFAERDRPALKDRTLPLFAKLKQDFNVQQFQFHTPPATSFLRL
HHHHHHHHHHCCHHHHHHHHHCCCCCHHCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHH
HRPEKFGDDLTAIRKTIVETNTTKQPLNGLEYGVEGLGIRGLVPMGYQGQHTGSVEFGMS
CCCHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FGQPFFDSFKDAYQAEIALLLPNGADFKAFGATFTPDIQAISELNSVMQGNEVIRTISLE
CCCHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEEEECC
GKTFALYRHAIKDYSGQVFGVLDIAMDRSHSEQVMADIRLKLILIGFAAMLIGTAIAWFI
CCHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGITRPIAETTQAMNDIAEGEGDLTRRITITSKDEIAELAQAFNRFVEKIHHTVTQVSD
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATSLLATSAEEMSGITHETQSMANRQNLETEQVATAMNEMAATVQEVAHNATDAADAANH
HHHHHHHCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
ANESTEQGKLVVQKVVATIAVLAEETAAAANAINELERNTAEIDSVLVVIRNITEQTNLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
ALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTTEIQKMIEALQLKAKSTVSAMETS
EHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SRTTQSCVAQVNQAGEELVAITQAVSTISQMNIQIASAANEQCAVSAEINKNINNINDIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEHHHHCCCCCHHHHH
TTTTNSAVHTARAGDELAQLAARLQLLLAQFRI
CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLKISTRIVVGICLLLLAMMSFIMLLVLSEFSSQVKESEQRELHKLYETAVANIASSGK
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
LAQAMATIVSLTPEIQSNFAERDRPALKDRTLPLFAKLKQDFNVQQFQFHTPPATSFLRL
HHHHHHHHHHCCHHHHHHHHHCCCCCHHCCCCHHHHHHHHCCCCCEEEECCCCHHHHHHH
HRPEKFGDDLTAIRKTIVETNTTKQPLNGLEYGVEGLGIRGLVPMGYQGQHTGSVEFGMS
CCCHHCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
FGQPFFDSFKDAYQAEIALLLPNGADFKAFGATFTPDIQAISELNSVMQGNEVIRTISLE
CCCHHHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEEEECC
GKTFALYRHAIKDYSGQVFGVLDIAMDRSHSEQVMADIRLKLILIGFAAMLIGTAIAWFI
CCHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKGITRPIAETTQAMNDIAEGEGDLTRRITITSKDEIAELAQAFNRFVEKIHHTVTQVSD
HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATSLLATSAEEMSGITHETQSMANRQNLETEQVATAMNEMAATVQEVAHNATDAADAANH
HHHHHHHCHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
ANESTEQGKLVVQKVVATIAVLAEETAAAANAINELERNTAEIDSVLVVIRNITEQTNLL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
ALNAAIEAARAGEQGRGFAVVADEVRTLATRTQASTTEIQKMIEALQLKAKSTVSAMETS
EHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
SRTTQSCVAQVNQAGEELVAITQAVSTISQMNIQIASAANEQCAVSAEINKNINNINDIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEEHHHHCCCCCHHHHH
TTTTNSAVHTARAGDELAQLAARLQLLLAQFRI
CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]