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The map label for this gene is cyc1 [H]

Identifier: 126175962

GI number: 126175962

Start: 4424728

End: 4425354

Strand: Reverse

Name: cyc1 [H]

Synonym: Sbal_3769

Alternate gene names: 126175962

Gene position: 4425354-4424728 (Counterclockwise)

Preceding gene: 126175963

Following gene: 126175961

Centisome position: 86.31

GC content: 49.76

Gene sequence:

>627_bases
ATGAAGATTAAAACATTCGTCATAGGCTTAACGCTATGCAGCGGCTATGCGGCCGCCTCCGTTGCGCCTTCTGGCAAACA
ATTGATGGAAATTATCCCCCAACCGGCACAGTTATGTGTGTCTTGTCATGGGGTAGAAGGTCAGGGCGTTGAACCGCTCG
GCCCTCGATTAGCGGGATTATCTAAACAATATATCTCGACCCAGTTACAGCATTTCCAAGCGGGTGTGCGCCAAAACGCA
ACCATGATGCCGATGGCAATGACGTTACAAGGTGATGGGATTGAGCAAGTGGCAAACTACTTTTCTGCAAAGCCTGCCAA
TGAGGTCAAGCCCGTTATCCGAGGTGAACAGGTGGTTTTTAATGACGATACCGCTCGTTTAGCCTACCAAGGTGATTGGT
CACGTGGTTTACCAGCCTGCGTGACCTGCCATGGTCCTTCGGGGTTAGGTGGCGGCTTATTTCCCCGTTTAGCAGGTCAG
CAAGCGAGTTATATTAAAACTCAATTACTGGCATGGCAGTCGGGAACGCGCAAAGGTGATGTCGATGGCATGATGGCGAA
CGTAGCTAACAAGCTTACCGCCGCTGAGGTTGATGCCTTAGCGAACTACTTTGCTAATTTGAAATAA

Upstream 100 bases:

>100_bases
AAAATGGGCGGCTGACTCAAAAATGGGCTCAGTGTGAGCAGCAACATAAATAACAATAACCACCTATGCTTTAGAGCTTA
ACTCTCTTCAAGGATAGAAC

Downstream 100 bases:

>100_bases
GGAGCCGGCCATGAAATATTCCGCAATGTTATTACTGGCCGCGATGGGGTCGTTAACCGTGCAGGCGCGAGCCGAATCGG
ATCCGCTGCAAGAGCGCCCA

Product: cytochrome c family protein

Products: NA

Alternate protein names: Cytochrome c552 [H]

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MKIKTFVIGLTLCSGYAAASVAPSGKQLMEIIPQPAQLCVSCHGVEGQGVEPLGPRLAGLSKQYISTQLQHFQAGVRQNA
TMMPMAMTLQGDGIEQVANYFSAKPANEVKPVIRGEQVVFNDDTARLAYQGDWSRGLPACVTCHGPSGLGGGLFPRLAGQ
QASYIKTQLLAWQSGTRKGDVDGMMANVANKLTAAEVDALANYFANLK

Sequences:

>Translated_208_residues
MKIKTFVIGLTLCSGYAAASVAPSGKQLMEIIPQPAQLCVSCHGVEGQGVEPLGPRLAGLSKQYISTQLQHFQAGVRQNA
TMMPMAMTLQGDGIEQVANYFSAKPANEVKPVIRGEQVVFNDDTARLAYQGDWSRGLPACVTCHGPSGLGGGLFPRLAGQ
QASYIKTQLLAWQSGTRKGDVDGMMANVANKLTAAEVDALANYFANLK
>Mature_208_residues
MKIKTFVIGLTLCSGYAAASVAPSGKQLMEIIPQPAQLCVSCHGVEGQGVEPLGPRLAGLSKQYISTQLQHFQAGVRQNA
TMMPMAMTLQGDGIEQVANYFSAKPANEVKPVIRGEQVVFNDDTARLAYQGDWSRGLPACVTCHGPSGLGGGLFPRLAGQ
QASYIKTQLLAWQSGTRKGDVDGMMANVANKLTAAEVDALANYFANLK

Specific function: Diheme, high potential cytochrome c [H]

COG id: COG2863

COG function: function code C; Cytochrome c553

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 22074; Mature: 22074

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKTFVIGLTLCSGYAAASVAPSGKQLMEIIPQPAQLCVSCHGVEGQGVEPLGPRLAGL
CCEEHEEEHHHHHCCCHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
SKQYISTQLQHFQAGVRQNATMMPMAMTLQGDGIEQVANYFSAKPANEVKPVIRGEQVVF
HHHHHHHHHHHHHHHHHCCCEECEEEEEECCCCHHHHHHHHCCCCHHHCCHHHCCCEEEE
NDDTARLAYQGDWSRGLPACVTCHGPSGLGGGLFPRLAGQQASYIKTQLLAWQSGTRKGD
ECCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCC
VDGMMANVANKLTAAEVDALANYFANLK
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKIKTFVIGLTLCSGYAAASVAPSGKQLMEIIPQPAQLCVSCHGVEGQGVEPLGPRLAGL
CCEEHEEEHHHHHCCCHHHCCCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHH
SKQYISTQLQHFQAGVRQNATMMPMAMTLQGDGIEQVANYFSAKPANEVKPVIRGEQVVF
HHHHHHHHHHHHHHHHHCCCEECEEEEEECCCCHHHHHHHHCCCCHHHCCHHHCCCEEEE
NDDTARLAYQGDWSRGLPACVTCHGPSGLGGGLFPRLAGQQASYIKTQLLAWQSGTRKGD
ECCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCC
VDGMMANVANKLTAAEVDALANYFANLK
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973648 [H]