Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 126175947

GI number: 126175947

Start: 4404211

End: 4404915

Strand: Reverse

Name: ssb [H]

Synonym: Sbal_3753

Alternate gene names: 126175947

Gene position: 4404915-4404211 (Counterclockwise)

Preceding gene: 126175948

Following gene: 126175939

Centisome position: 85.91

GC content: 51.63

Gene sequence:

>705_bases
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCTAACATCACAGTTGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACAGGTGAATACCTGCGTAAAGGTTCACAGGTTTACCTTGAA
GGTAAACTGCAAACCCGTAAGTGGAAAGACCAAAGCGGTCAAGACCGTTACAGCACTGAAGTGGTTATTGATCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGCCAAGCACAAGGCGCGCCAATGGGCGGCGGCATGCCACAAAACG
CAGGTTACCAATCTGCACCACAACAAGCGGCACCAGCGCAAAATCAATATGCGCCAGCCCCTCAAGCTGCACCTGCTTAC
CAAGCGCCAGCTCAGCAACAATATGCTGCGCCAGCACCTGCTCAGCAGCAATATGGACAGCAACAAGCTCAACCACAACA
AGGTGGTTATGCGCCTAAGCCACAAGCCGCTCCAGCGCCTGCTTACCAAGCGCCAGCCGCACCGGCACAACGTCCAGCAC
CACAACCACAGCAAAACTTCACTCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTCTAA

Upstream 100 bases:

>100_bases
CTGCCGTGTGGTATTTGGGGAAGCTGATTTTCCTCTATGGCGACACAGATAAACAACATACTGAATTAATAGATTATTTA
AAGAATCGCAGGAGATTTCA

Downstream 100 bases:

>100_bases
TTTAGAGCGTATCGAAGTGTAAAGACGGTATCGTCTTAAATGAACAAAGCCACGCGAGTCGTGGCTTTGTTGTTTCTGGT
CTTTATGTTTTTAGTCTTTA

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAAPAPAQQQYGQQQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Sequences:

>Translated_234_residues
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAAPAPAQQQYGQQQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF
>Mature_233_residues
ASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLEG
KLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAYQ
APAQQQYAAPAPAQQQYGQQQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=111, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=3e-13,
Organism=Escherichia coli, GI1790494, Length=120, Percent_Identity=78.3333333333333, Blast_Score=201, Evalue=4e-53,
Organism=Drosophila melanogaster, GI85725234, Length=104, Percent_Identity=34.6153846153846, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24647376, Length=104, Percent_Identity=34.6153846153846, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 25190; Mature: 25059

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLF
CCCCCCCEEEEECCCCCCCCEEECCCCCEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHH
GKLAEITGEYLRKGSQVYLEGKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQ
HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCC
AQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAYQAPAQQQYAAPAPAQQQYGQ
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHH
QQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLF
CCCCCCEEEEECCCCCCCCEEECCCCCEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHH
GKLAEITGEYLRKGSQVYLEGKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQ
HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCCC
AQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAYQAPAQQQYAAPAPAQQQYGQ
CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHH
QQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]