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The map label for this gene is ybfI [H]

Identifier: 126175884

GI number: 126175884

Start: 4309121

End: 4309963

Strand: Reverse

Name: ybfI [H]

Synonym: Sbal_3689

Alternate gene names: 126175884

Gene position: 4309963-4309121 (Counterclockwise)

Preceding gene: 126175885

Following gene: 126175883

Centisome position: 84.06

GC content: 47.81

Gene sequence:

>843_bases
ATGAGTACAGCAATACCCGTTGAAAACATTAACTATTGGCGTCATCCCAGCTTATCAGGCATAGAACTGAGTCAGGCGGA
ATTCACTCATTTCAGTTTTGATAAACATGTGCATCTGGATTACCACTTAGGTGTGGTCACCCAAGGTGCGCAGCAGTTTG
TGAATAAGGGCAGTAGTTATCAGCTTGGTCAGCACAGTCTATCGACCTTAAATCCTGACGAAACCCACGATGGCCAGAGC
CGCGATGCCGACGGTTATCGGGTGAAAGTCATGTCGATCCCCGTGGAATACATGAATGAAGTCAGCCAAGAACTGGGCTT
GAAGGAGCACTTTTTCAGCGCGCCCATGGTGGATGACCCGATGCTTTACCAATACTTTATTCAGCTACACGAGCTATTAA
TCCAAGGCCAATGCAGTGCGCTCGCGGGCGAGTCACACCTACTGAACTTTATTCATCTGCTGCTGGAGCGTTACCCAAGC
GGCGTTTCATCTTGCATCACTAAGCCGAATCAACCGCAGGGGCTATCTAAGTTGCAGGTGAGCTTAGTGAAGCAGCGAAT
TCACGATGAGCCTTGGCATAATACTCAGCTTGAAACCTTAGCCAATGAAGTGAGCTTAAGTAAGTTTCAGTTTTTGCGGC
AATTTAAACAGGCAACAGGGATGACACCCCATGCTTATCTCAAGCGGGTGCGTTTAGAGTTGGCGAAAAAATCCTTAAGT
CATGGCGCTCTAGTGGCGGATGTGGCGCAGCAATTCGGATTTTTTGACCAGAGCCATTTGAATAAAGCCTTTAAGCAGGC
ATTCCTATTATCGCCGGTGCAATTTCAGCGACGTATGCTCTAG

Upstream 100 bases:

>100_bases
ATTTACTATTCCCACGCTAACAATGAAGGCTAGAATGAACCCTAGTGGATTTGAGTTTTCCCAGTGTTAAAACTGATGTT
ATAGGTAATAGCCGCGAGCG

Downstream 100 bases:

>100_bases
TTTCCCCCGTCTTTCGACGATTGCTGCAGAGTTGAAGGTTGCAGCTTTTAAAGCCGTTGCTTTGAAACCGTTATTTCGAA
AACGGTTGCCTCTAAAGTCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSTAIPVENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSYQLGQHSLSTLNPDETHDGQS
RDADGYRVKVMSIPVEYMNEVSQELGLKEHFFSAPMVDDPMLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPS
GVSSCITKPNQPQGLSKLQVSLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLS
HGALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML

Sequences:

>Translated_280_residues
MSTAIPVENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSYQLGQHSLSTLNPDETHDGQS
RDADGYRVKVMSIPVEYMNEVSQELGLKEHFFSAPMVDDPMLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPS
GVSSCITKPNQPQGLSKLQVSLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLS
HGALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML
>Mature_279_residues
STAIPVENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSYQLGQHSLSTLNPDETHDGQSR
DADGYRVKVMSIPVEYMNEVSQELGLKEHFFSAPMVDDPMLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPSG
VSSCITKPNQPQGLSKLQVSLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLSH
GALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 31909; Mature: 31778

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAIPVENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSY
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCC
QLGQHSLSTLNPDETHDGQSRDADGYRVKVMSIPVEYMNEVSQELGLKEHFFSAPMVDDP
CCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCHHHHHHCCCCCCCH
MLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPSGVSSCITKPNQPQGLSKLQV
HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHH
SLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLS
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HGALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure 
STAIPVENINYWRHPSLSGIELSQAEFTHFSFDKHVHLDYHLGVVTQGAQQFVNKGSSY
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCC
QLGQHSLSTLNPDETHDGQSRDADGYRVKVMSIPVEYMNEVSQELGLKEHFFSAPMVDDP
CCCHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCHHHHHHCCCCCCCH
MLYQYFIQLHELLIQGQCSALAGESHLLNFIHLLLERYPSGVSSCITKPNQPQGLSKLQV
HHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHHHH
SLVKQRIHDEPWHNTQLETLANEVSLSKFQFLRQFKQATGMTPHAYLKRVRLELAKKSLS
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
HGALVADVAQQFGFFDQSHLNKAFKQAFLLSPVQFQRRML
CCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]