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The map label for this gene is yhcM [H]

Identifier: 126175848

GI number: 126175848

Start: 4274949

End: 4276061

Strand: Reverse

Name: yhcM [H]

Synonym: Sbal_3653

Alternate gene names: 126175848

Gene position: 4276061-4274949 (Counterclockwise)

Preceding gene: 126175851

Following gene: 126175847

Centisome position: 83.4

GC content: 47.62

Gene sequence:

>1113_bases
GTGCCTCAGTTAAGCCCTTGGCAGCATTATCAAAAAGATCTTACCCGTGACGGTTTCTCCCATGATCCGGCCCAAGAAAT
TGCGGTCAAAGCATTACAACGTGTCTATGAAGACTTAACGGCGGCGGAAGAGCCGAGTTCTATCGTAGGGAAATTGTTTA
GTGCATTCGGCTTAAAATCGGCGCCTGCTTCACCTAAAGGCCTGTATCTTTGGGGCGGTGTGGGTCGCGGCAAAACCTAT
CTGATGGATACTTTTTTTGATGCCTTGCCTGGCGATCAAAAGCTGCGGGCTCACTTCCATCGTTTCATGCATCAGCTACA
TTTAGATTTAGATGAACTGAAAGGCGTGCGCGATCCCTTGCTGGTGATTGCGAAAAAGATGGCCGCGAAATATCGCGTTA
TCTGTTTCGATGAATTCTTTGTCTCCGATATTACCGATGCCATGTTGTTAGGTACGCTGTTTCAAGCACTATTTAAAGAA
GGCGTTGTGCTAGTCGCTACGTCTAACATCATCCCCGACGACTTATATAAAAATGGCTTACAGCGGGCACGTTTCTTACC
CGCGATAGCCTTAATTAATCAACATTGTGAAGTACTCAATGTGGATTCTGGCATCGATTATCGACTACGCACCCTTGAGC
AAGCGGAGATTTATCATCATCCGTTAGATGCACAAGCCGATGCCAATCTTATGCGTTACTTTAGCCAGTTAGCGCCTGAG
TCTGAGGTGCAAACCGCCGACATTGCAATCGAAGGTCGTAGCATCAGTATTCGTCAGCAGGCGCAGGGCGTATTGTTGGC
CGATTTTAGAGCGCTCTGTGATGGTCCGCGAAGTCAGCGTGACTACATGGAATTGGCGCGGATTTACCATACTGTGCTGG
TCAGCGGCATTGAGCAAATGGGCGCATTTTTGACCGGTGATGATATCGCCAGACGATTTTTAGCTATGGTTGATGAGTTT
TACGAGCGCAATGTAAAGCTTATCGTGTCGGCCCAAGTGCCACTCGAAGACATCTACGCCGATGGCTTGCTTAACTTCGA
GTTTAGACGTTGTCGCTCGCGTCTTATTGAGATGCAATCACACGATTATTTGAAAACAGAGCACCTGCCTTAA

Upstream 100 bases:

>100_bases
CGTTGAGGCAAAAGTCGTATTCAGCATTAATATATCCTGCGCCACATTGGCCGTGCTAATATCATCGCAGTTTTAATAAA
GGACATAAGAGAATTAAAAA

Downstream 100 bases:

>100_bases
CCCTGCGGCGCAAGAGTTTTGCTTTAACTCCCGTGTTAAATCACCAATGGCTTGTTAATCCTTAGGATGACAAGCCAGAT
TGGTCGATATTTTATAAATT

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MPQLSPWQHYQKDLTRDGFSHDPAQEIAVKALQRVYEDLTAAEEPSSIVGKLFSAFGLKSAPASPKGLYLWGGVGRGKTY
LMDTFFDALPGDQKLRAHFHRFMHQLHLDLDELKGVRDPLLVIAKKMAAKYRVICFDEFFVSDITDAMLLGTLFQALFKE
GVVLVATSNIIPDDLYKNGLQRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPLDAQADANLMRYFSQLAPE
SEVQTADIAIEGRSISIRQQAQGVLLADFRALCDGPRSQRDYMELARIYHTVLVSGIEQMGAFLTGDDIARRFLAMVDEF
YERNVKLIVSAQVPLEDIYADGLLNFEFRRCRSRLIEMQSHDYLKTEHLP

Sequences:

>Translated_370_residues
MPQLSPWQHYQKDLTRDGFSHDPAQEIAVKALQRVYEDLTAAEEPSSIVGKLFSAFGLKSAPASPKGLYLWGGVGRGKTY
LMDTFFDALPGDQKLRAHFHRFMHQLHLDLDELKGVRDPLLVIAKKMAAKYRVICFDEFFVSDITDAMLLGTLFQALFKE
GVVLVATSNIIPDDLYKNGLQRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPLDAQADANLMRYFSQLAPE
SEVQTADIAIEGRSISIRQQAQGVLLADFRALCDGPRSQRDYMELARIYHTVLVSGIEQMGAFLTGDDIARRFLAMVDEF
YERNVKLIVSAQVPLEDIYADGLLNFEFRRCRSRLIEMQSHDYLKTEHLP
>Mature_369_residues
PQLSPWQHYQKDLTRDGFSHDPAQEIAVKALQRVYEDLTAAEEPSSIVGKLFSAFGLKSAPASPKGLYLWGGVGRGKTYL
MDTFFDALPGDQKLRAHFHRFMHQLHLDLDELKGVRDPLLVIAKKMAAKYRVICFDEFFVSDITDAMLLGTLFQALFKEG
VVLVATSNIIPDDLYKNGLQRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPLDAQADANLMRYFSQLAPES
EVQTADIAIEGRSISIRQQAQGVLLADFRALCDGPRSQRDYMELARIYHTVLVSGIEQMGAFLTGDDIARRFLAMVDEFY
ERNVKLIVSAQVPLEDIYADGLLNFEFRRCRSRLIEMQSHDYLKTEHLP

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=406, Percent_Identity=34.7290640394089, Blast_Score=226, Evalue=3e-59,
Organism=Escherichia coli, GI1789627, Length=377, Percent_Identity=48.2758620689655, Blast_Score=352, Evalue=2e-98,
Organism=Caenorhabditis elegans, GI17505769, Length=348, Percent_Identity=34.1954022988506, Blast_Score=214, Evalue=4e-56,
Organism=Saccharomyces cerevisiae, GI6320783, Length=329, Percent_Identity=30.6990881458967, Blast_Score=148, Evalue=1e-36,
Organism=Drosophila melanogaster, GI20129913, Length=295, Percent_Identity=37.2881355932203, Blast_Score=193, Evalue=2e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 42029; Mature: 41898

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQLSPWQHYQKDLTRDGFSHDPAQEIAVKALQRVYEDLTAAEEPSSIVGKLFSAFGLKS
CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
APASPKGLYLWGGVGRGKTYLMDTFFDALPGDQKLRAHFHRFMHQLHLDLDELKGVRDPL
CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHH
LVIAKKMAAKYRVICFDEFFVSDITDAMLLGTLFQALFKEGVVLVATSNIIPDDLYKNGL
HHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
QRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPLDAQADANLMRYFSQLAPE
HHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
SEVQTADIAIEGRSISIRQQAQGVLLADFRALCDGPRSQRDYMELARIYHTVLVSGIEQM
CCCCEEEEEEECCCEEHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
GAFLTGDDIARRFLAMVDEFYERNVKLIVSAQVPLEDIYADGLLNFEFRRCRSRLIEMQS
CCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHC
HDYLKTEHLP
CCCCCCCCCC
>Mature Secondary Structure 
PQLSPWQHYQKDLTRDGFSHDPAQEIAVKALQRVYEDLTAAEEPSSIVGKLFSAFGLKS
CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
APASPKGLYLWGGVGRGKTYLMDTFFDALPGDQKLRAHFHRFMHQLHLDLDELKGVRDPL
CCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHH
LVIAKKMAAKYRVICFDEFFVSDITDAMLLGTLFQALFKEGVVLVATSNIIPDDLYKNGL
HHHHHHHHHHEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHH
QRARFLPAIALINQHCEVLNVDSGIDYRLRTLEQAEIYHHPLDAQADANLMRYFSQLAPE
HHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
SEVQTADIAIEGRSISIRQQAQGVLLADFRALCDGPRSQRDYMELARIYHTVLVSGIEQM
CCCCEEEEEEECCCEEHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
GAFLTGDDIARRFLAMVDEFYERNVKLIVSAQVPLEDIYADGLLNFEFRRCRSRLIEMQS
CCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHC
HDYLKTEHLP
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]