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The map label for this gene is ybiX [C]

Identifier: 126175829

GI number: 126175829

Start: 4253952

End: 4254626

Strand: Reverse

Name: ybiX [C]

Synonym: Sbal_3634

Alternate gene names: 126175829

Gene position: 4254626-4253952 (Counterclockwise)

Preceding gene: 126175830

Following gene: 126175828

Centisome position: 82.98

GC content: 46.67

Gene sequence:

>675_bases
ATGCTGATTGAAATTCCTAATGTTTTCTCAAAACAAGAAGTGAGTCACTTACGCGAACAGTTAGATGCTCGCCGCTGGAT
AGACGGTAATCAAACCTCCGGCGCGATGGCGACAACTCGTAAGCGCAATCAGCAACTAGATAAGGACGACCCAGTAGCTG
TCGCGCTAGGTCAGCAGATTATGGACAGGCTGTTAGCACATCCACAATTTGTATCTGCGGCATTACCATTACAGTTTTAT
CCGCCTTTGTTTAATCGATATCAAGGCGGTGAAACCTTTGGATATCACATAGATAATGCTATCCGCTCGACTCCTGATGG
GATGATCCGTACCGATTTGTCAGCGACTTTATTTCTCAGTGAACCAGAAAACTATCAGGGCGGAGAATTAGTTATCCAAG
ATACCTACGGCCAACAAAGCATAAAATTATCAGCGGGTTCATTAGTGCTGTATCCATCGAGCAGCTTGCATCAGGTCACG
CCAGTTCTGTCGGGCGAGCGTACCGCCGCCTTTATGTGGCTGCAAAGTATGGTTCGTGATGAAGGTCAGCGCCGCTTGCT
ATTTCAACTCGATCAATCAATTCAATCTTTGACAGCACAGACCGCGGCAGAACAAGAGTTGTTTAATCTGAGTGGCGTGT
ATCACAATCTATTGAGGCGCTGGAGTGAGCTGTAA

Upstream 100 bases:

>100_bases
TGTCAGTCATTAGCTAATGTGAGGGCAGCCCTCGGGCTGCCTTTTATGTTTTATAAACGGTATTACTCATGCCGTATTTT
TTGCCCTATGGAACCCAGAG

Downstream 100 bases:

>100_bases
TTGGCGGTTATTCCTCTAGTCAGCATGATAGGCGCTTATAGCTTGATGGAGGGGGACTGAGCGCTAGATAATTAATCCAC
TTTTAGTATTCATGCCGCTT

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQFY
PPLFNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVT
PVLSGERTAAFMWLQSMVRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL

Sequences:

>Translated_224_residues
MLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQFY
PPLFNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVT
PVLSGERTAAFMWLQSMVRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
>Mature_224_residues
MLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPVAVALGQQIMDRLLAHPQFVSAALPLQFY
PPLFNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFLSEPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVT
PVLSGERTAAFMWLQSMVRDEGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=225, Percent_Identity=52.4444444444444, Blast_Score=252, Evalue=1e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3634_SHEB5 (A3D8P6)

Other databases:

- EMBL:   CP000563
- RefSeq:   YP_001051978.1
- PDB:   3DKQ
- PDBsum:   3DKQ
- ProteinModelPortal:   A3D8P6
- SMR:   A3D8P6
- STRING:   A3D8P6
- GeneID:   4843246
- GenomeReviews:   CP000563_GR
- KEGG:   sbl:Sbal_3634
- NMPDR:   fig|325240.3.peg.2897
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   ADWADGK
- PhylomeDB:   A3D8P6
- ProtClustDB:   PRK05467
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25313; Mature: 25313

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 167-167

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPVAVALGQQI
CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
MDRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFLS
HHHHHCCHHHHHHHCCCHHCCHHHHHCCCCCEECEEHHHHHHCCCCCCEEECCEEEEEEE
EPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFMWLQSMVRD
CCCCCCCCEEEEEECCCCCEEEEECCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHH
EGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRNQQLDKDDPVAVALGQQI
CEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHH
MDRLLAHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPDGMIRTDLSATLFLS
HHHHHCCHHHHHHHCCCHHCCHHHHHCCCCCEECEEHHHHHHCCCCCCEEECCEEEEEEE
EPENYQGGELVIQDTYGQQSIKLSAGSLVLYPSSSLHQVTPVLSGERTAAFMWLQSMVRD
CCCCCCCCEEEEEECCCCCEEEEECCEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHH
EGQRRLLFQLDQSIQSLTAQTAAEQELFNLSGVYHNLLRRWSEL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA