| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is clpP1 [H]
Identifier: 126175793
GI number: 126175793
Start: 4225609
End: 4227531
Strand: Reverse
Name: clpP1 [H]
Synonym: Sbal_3598
Alternate gene names: 126175793
Gene position: 4227531-4225609 (Counterclockwise)
Preceding gene: 126175794
Following gene: 126175792
Centisome position: 82.45
GC content: 49.82
Gene sequence:
>1923_bases ATGATCTATGACGAGATTGGCGGCTGGGGTATTAGTGCGCAACAGTTCGCCCGTGATCTACAGGCCCTAGGCAAAGTGGG CACCATTACCGCCCGTATTCATTCGCCAGGCGGCGATGTATTCGAAGGCATGGCGATTTACAACATGATCAAAGGCCACC CAGCGCACAAAGTTTGCTACATCGATGGCCTTGCAGCTTCGATGGCCAGTGTGATTGCCATGGCTTTTGATGAAGTCATC ATGCCTGAAAACGCCATGATGATGGTGCATAAGCCTTGGGGCGGAACTCTCGGTGATGCCGAAGATATGCGCAAATACGC CGACTTGCTCGATAAGGTTGAAGGCAATTTAGTGGGCGCCTACCAACACAAAACAGGCTTGTCAGAAGATGAACTCCACG CTCTGTTAGCCGCTGAAACTTGGCTAACTGGGCGCGAAGCAGTGGAAAAAGGTTTTGCCAACACCCTCACCGATCCGCTG CAAATGGCGGCATCACTTAATTCAAAACGTCTTAAGGATTTTACTAATATGCCTGAAGCTCTCAAAAACCTGTTTGCACC GCAGGGTAACAGTGCTCCCAACCCACTCGTGCCAGCACCAGCAGCACCTAATGCTCAGTTGCCTGCGCCTGCAGCAACAC AACCTGATACCACAGCTATTCAAGCGGCAGCAATTGCGTTTAATACTGAGCGTATGAACGGTATCAATGCGGCATTTGCT TTCTTTCCTGAGTTAGCAGAGTTACGTAATCAGTGTATTGCCGATGCCAACATCAATGCTGATAAAGCCAAAGACATGAT CTTGGCAAAGTTGGGTGAGAACACTACGCCGTGCGCTGTGCAGCCTAAAAGTGTCATTATTCATGCCAGCAACGGTAACA TCGTGGGTGATTCAATTCGTGCTCAGTTAATGGCGCGTTCCGGCCATACAAAAGCTGAAGCTAGCAACAACTATTCGAGC TACTCCATGCTTGAGTTGGCACGCGCCTCACTGTTAGATCGCGGTATCGGCTGCGCTGGATTCAACAAAATGGAGATGGT CGGCTTAGCCTTTACCCACAGCTCAAGCGACTTTGGCAACATTCTGTTGGATGTAGCTAATAAATCAGTGTTAATGGGCT GGGAAACCGCCGAAGAAACCTTCGAGCGTTGGACCAAGAAAGGCCAGTTAGGCAACTTTAATATCGCCAAACGTATCGGC CTTGGTGACTTTAATAGCCTGCGCCAAGTGCGTGAAGGTGCGGAATACAAGTACGTCACCGTTGGCGACCATGCGCAACA AATCGCGCTGGCTACCTATGGCGAGTTGTTCAGCATTACCCGTCAGGCCATTATCAACGACGATATGAGTATGTTGACTG ATATCCCAATGAAAATGGGCTTTGCCGCCAAAGGTACCATTGGCGATTTGGTATATGCGGTATTAACCAAAAACCCCGCA ATGGCTGATGGCAAAACGCTGTTCCATAATGAACACGGCAACTTAGGTTCCGGTGCGCCAAGTGTGGCGGCCCTCGATGC TAATCGCATGTTAATGCGTAAGCAAAAATCGGGTAATCGCCACCTGAATATTCGCCCTGAGTTTGTACTGTGTCCTGTAG CGCTTGAAACCACGTTTAACCAGATCATTAAGTCCAGTTCTGTTAAAGGTGCCGATGTGAATTCAGGTATTGCTAACCCA ATCCAAAACTTTGCCGAAGTGATTGCTGAGCCTCGTTTAGATGATAACAGCGCGGTGCAGTGGTTCCTTTCTGCGGGCCA AGGCCGTGACACCATTGAGGTGGCTTACCTTGATGGCATCGACACGCCTTACATTGAACAGCAACAAGGCTTCACTATCG ACGGGGTAGCCACCAAAGTGCGTATCGATGCGGGTGTGGCGCCGCTCGATTACCGTGGCTTGGTGAAATCAACAGGCGTT TAA
Upstream 100 bases:
>100_bases AAGCGGAGCGCTGAGCGTGCCCGTCGCAACGCTGAACCAGAGTAATAAACCCGCCAATAGCTGGTATAGCCTCAAAGCCC AAAACGGTAATGCCGAGTTA
Downstream 100 bases:
>100_bases AGAGCGCTAAACCGACATAAATGGGCTATCAAACGATAGCCCTTTTTTATTCAGTTTTGTTTTTAAGCAGGAACACTCTC ATGAAAAATTATGTACAAGA
Product: peptidase S14 ClpP
Products: NA
Alternate protein names: Endopeptidase Clp 1 [H]
Number of amino acids: Translated: 640; Mature: 640
Protein sequence:
>640_residues MIYDEIGGWGISAQQFARDLQALGKVGTITARIHSPGGDVFEGMAIYNMIKGHPAHKVCYIDGLAASMASVIAMAFDEVI MPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGAYQHKTGLSEDELHALLAAETWLTGREAVEKGFANTLTDPL QMAASLNSKRLKDFTNMPEALKNLFAPQGNSAPNPLVPAPAAPNAQLPAPAATQPDTTAIQAAAIAFNTERMNGINAAFA FFPELAELRNQCIADANINADKAKDMILAKLGENTTPCAVQPKSVIIHASNGNIVGDSIRAQLMARSGHTKAEASNNYSS YSMLELARASLLDRGIGCAGFNKMEMVGLAFTHSSSDFGNILLDVANKSVLMGWETAEETFERWTKKGQLGNFNIAKRIG LGDFNSLRQVREGAEYKYVTVGDHAQQIALATYGELFSITRQAIINDDMSMLTDIPMKMGFAAKGTIGDLVYAVLTKNPA MADGKTLFHNEHGNLGSGAPSVAALDANRMLMRKQKSGNRHLNIRPEFVLCPVALETTFNQIIKSSSVKGADVNSGIANP IQNFAEVIAEPRLDDNSAVQWFLSAGQGRDTIEVAYLDGIDTPYIEQQQGFTIDGVATKVRIDAGVAPLDYRGLVKSTGV
Sequences:
>Translated_640_residues MIYDEIGGWGISAQQFARDLQALGKVGTITARIHSPGGDVFEGMAIYNMIKGHPAHKVCYIDGLAASMASVIAMAFDEVI MPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGAYQHKTGLSEDELHALLAAETWLTGREAVEKGFANTLTDPL QMAASLNSKRLKDFTNMPEALKNLFAPQGNSAPNPLVPAPAAPNAQLPAPAATQPDTTAIQAAAIAFNTERMNGINAAFA FFPELAELRNQCIADANINADKAKDMILAKLGENTTPCAVQPKSVIIHASNGNIVGDSIRAQLMARSGHTKAEASNNYSS YSMLELARASLLDRGIGCAGFNKMEMVGLAFTHSSSDFGNILLDVANKSVLMGWETAEETFERWTKKGQLGNFNIAKRIG LGDFNSLRQVREGAEYKYVTVGDHAQQIALATYGELFSITRQAIINDDMSMLTDIPMKMGFAAKGTIGDLVYAVLTKNPA MADGKTLFHNEHGNLGSGAPSVAALDANRMLMRKQKSGNRHLNIRPEFVLCPVALETTFNQIIKSSSVKGADVNSGIANP IQNFAEVIAEPRLDDNSAVQWFLSAGQGRDTIEVAYLDGIDTPYIEQQQGFTIDGVATKVRIDAGVAPLDYRGLVKSTGV >Mature_640_residues MIYDEIGGWGISAQQFARDLQALGKVGTITARIHSPGGDVFEGMAIYNMIKGHPAHKVCYIDGLAASMASVIAMAFDEVI MPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGAYQHKTGLSEDELHALLAAETWLTGREAVEKGFANTLTDPL QMAASLNSKRLKDFTNMPEALKNLFAPQGNSAPNPLVPAPAAPNAQLPAPAATQPDTTAIQAAAIAFNTERMNGINAAFA FFPELAELRNQCIADANINADKAKDMILAKLGENTTPCAVQPKSVIIHASNGNIVGDSIRAQLMARSGHTKAEASNNYSS YSMLELARASLLDRGIGCAGFNKMEMVGLAFTHSSSDFGNILLDVANKSVLMGWETAEETFERWTKKGQLGNFNIAKRIG LGDFNSLRQVREGAEYKYVTVGDHAQQIALATYGELFSITRQAIINDDMSMLTDIPMKMGFAAKGTIGDLVYAVLTKNPA MADGKTLFHNEHGNLGSGAPSVAALDANRMLMRKQKSGNRHLNIRPEFVLCPVALETTFNQIIKSSSVKGADVNSGIANP IQNFAEVIAEPRLDDNSAVQWFLSAGQGRDTIEVAYLDGIDTPYIEQQQGFTIDGVATKVRIDAGVAPLDYRGLVKSTGV
Specific function: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S14 family [H]
Homologues:
Organism=Caenorhabditis elegans, GI17538017, Length=127, Percent_Identity=32.2834645669291, Blast_Score=69, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001907 - InterPro: IPR018215 [H]
Pfam domain/function: PF00574 CLP_protease [H]
EC number: =3.4.21.92 [H]
Molecular weight: Translated: 68821; Mature: 68821
Theoretical pI: Translated: 5.50; Mature: 5.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIYDEIGGWGISAQQFARDLQALGKVGTITARIHSPGGDVFEGMAIYNMIKGHPAHKVCY CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE IDGLAASMASVIAMAFDEVIMPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGA ECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEE YQHKTGLSEDELHALLAAETWLTGREAVEKGFANTLTDPLQMAASLNSKRLKDFTNMPEA EHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHH LKNLFAPQGNSAPNPLVPAPAAPNAQLPAPAATQPDTTAIQAAAIAFNTERMNGINAAFA HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEHHHCCCHHHHHH FFPELAELRNQCIADANINADKAKDMILAKLGENTTPCAVQPKSVIIHASNGNIVGDSIR HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCEEEEECCCCCEECHHHH AQLMARSGHTKAEASNNYSSYSMLELARASLLDRGIGCAGFNKMEMVGLAFTHSSSDFGN HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHH ILLDVANKSVLMGWETAEETFERWTKKGQLGNFNIAKRIGLGDFNSLRQVREGAEYKYVT HHHEECCCEEEEECHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHCCCCEEEEE VGDHAQQIALATYGELFSITRQAIINDDMSMLTDIPMKMGFAAKGTIGDLVYAVLTKNPA ECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHCCCCCCCCHHHHHHHHHCCCCC MADGKTLFHNEHGNLGSGAPSVAALDANRMLMRKQKSGNRHLNIRPEFVLCPVALETTFN CCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCCCEEECCCCEEEECHHHHHHHH QIIKSSSVKGADVNSGIANPIQNFAEVIAEPRLDDNSAVQWFLSAGQGRDTIEVAYLDGI HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEECCC DTPYIEQQQGFTIDGVATKVRIDAGVAPLDYRGLVKSTGV CCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCHHCCCC >Mature Secondary Structure MIYDEIGGWGISAQQFARDLQALGKVGTITARIHSPGGDVFEGMAIYNMIKGHPAHKVCY CCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE IDGLAASMASVIAMAFDEVIMPENAMMMVHKPWGGTLGDAEDMRKYADLLDKVEGNLVGA ECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEE YQHKTGLSEDELHALLAAETWLTGREAVEKGFANTLTDPLQMAASLNSKRLKDFTNMPEA EHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHH LKNLFAPQGNSAPNPLVPAPAAPNAQLPAPAATQPDTTAIQAAAIAFNTERMNGINAAFA HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEHHHCCCHHHHHH FFPELAELRNQCIADANINADKAKDMILAKLGENTTPCAVQPKSVIIHASNGNIVGDSIR HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCEEEEECCCCCEECHHHH AQLMARSGHTKAEASNNYSSYSMLELARASLLDRGIGCAGFNKMEMVGLAFTHSSSDFGN HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCCHHH ILLDVANKSVLMGWETAEETFERWTKKGQLGNFNIAKRIGLGDFNSLRQVREGAEYKYVT HHHEECCCEEEEECHHHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHCCCCEEEEE VGDHAQQIALATYGELFSITRQAIINDDMSMLTDIPMKMGFAAKGTIGDLVYAVLTKNPA ECCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHCCCCCCCCHHHHHHHHHCCCCC MADGKTLFHNEHGNLGSGAPSVAALDANRMLMRKQKSGNRHLNIRPEFVLCPVALETTFN CCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCCCEEECCCCEEEECHHHHHHHH QIIKSSSVKGADVNSGIANPIQNFAEVIAEPRLDDNSAVQWFLSAGQGRDTIEVAYLDGI HHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEEEEEECCC DTPYIEQQQGFTIDGVATKVRIDAGVAPLDYRGLVKSTGV CCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968 [H]