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The map label for this gene is csgD [C]

Identifier: 126175697

GI number: 126175697

Start: 4099946

End: 4100695

Strand: Reverse

Name: csgD [C]

Synonym: Sbal_3500

Alternate gene names: 126175697

Gene position: 4100695-4099946 (Counterclockwise)

Preceding gene: 126175698

Following gene: 126175693

Centisome position: 79.98

GC content: 44.53

Gene sequence:

>750_bases
ATGGAATGTTTAAAAATCAAACTAAAGAGGCTGGTCAAACATACCATTTTGCTAATAGATAATACTTTTCAGGGAGGAGA
GTCATTGAGCACAATTAATGAGTTAGTTTTTTTACACCAAATGGCGGCGCCATGTCATTTAGCGTTACTCGCTGAATCCA
TAGGTTTGAAAACTCGCGTCGTTAAACATGCGGCGGAATTGGATTTAGATAAAAGTCGTCGAAGTTTCTATTTGATCACC
CAAAAAGGCTCTGCACTCGATAACAAGGGAATACCTTTACTGGCTTCACGCTTAGTATCACATTTCCCCGTGGCGCTGTA
CCAAGTCGAGCGAGACTCTTTAGATCAAGAGTCGGCTATGTTACTCGGTATTCGTGGCCTGTTGTTTGCCGATCAACGTT
TGGATTTGATGTTGACGGGTTTACGTAAAATGGTGGCAGAGGAGCTGTGGTACGATAGAACACTACTGAGTAAGGTGTTC
CGTCGGGTAGTACAAAAGCTCGATGGCAATAATGAGATGCCCTCCGATTCAGTGGCTATGCTGCAGATGTTGACATCCCG
TGAGCGCACTATTATTCAATTTGTGTCGAGTGGCGCAAGGAATAAAGAAATCGCCCACCGATTGTGCATCAGCGAACATA
CGGTGAAGGCACACATTTCCTCTATCTTCCGTAAAACCCAGTCCCGTAATCGTGTTGAATTGTTGCGTTGGGCGCAAACC
TATCAGACCCACTTTGAGTTATGCAGCTAG

Upstream 100 bases:

>100_bases
TTGTCTTCGGTCAGTTAGTCGAACTTACTAGGATTAAAGAGGGAATAGTACATTTGGGTGATGTTTTTCAGTCCTTAACT
AGTCAGAATCAACTAGGTTA

Downstream 100 bases:

>100_bases
TCAGTGAAAGGTATTTTTGTCGTGACTGTTGATTTTAATGACGATTAGCTCATTTGGTGATTCATCAATATAAATAAAGC
GGGAATGTTTGAATAAACAT

Product: response regulator receiver protein

Products: NA

Alternate protein names: Transcriptional Regulator LuxR Family; Transcriptional Regulator LuxR Family Protein; Two Component LuxR Family Transcriptional Regulator; CsgAB Operon Transcriptional Regulatory Protein; Regulatory Protein LuxR; Response Regulator Receiver Protein; Response Regulator Receiver Domain Protein; LuxR Family CSG Operon Transcriptional Regulator; Transcriptional Regulator; Response Regulator; Csg Operon Transcription Regulator Protein; Protein-Glutamate Methylesterase; NarL Family Two-Component Response Regulator; Transcriptional Regulator VpsT; Nitrate/Nitrite Response Regulator

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MECLKIKLKRLVKHTILLIDNTFQGGESLSTINELVFLHQMAAPCHLALLAESIGLKTRVVKHAAELDLDKSRRSFYLIT
QKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAMLLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVF
RRVVQKLDGNNEMPSDSVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQT
YQTHFELCS

Sequences:

>Translated_249_residues
MECLKIKLKRLVKHTILLIDNTFQGGESLSTINELVFLHQMAAPCHLALLAESIGLKTRVVKHAAELDLDKSRRSFYLIT
QKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAMLLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVF
RRVVQKLDGNNEMPSDSVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQT
YQTHFELCS
>Mature_249_residues
MECLKIKLKRLVKHTILLIDNTFQGGESLSTINELVFLHQMAAPCHLALLAESIGLKTRVVKHAAELDLDKSRRSFYLIT
QKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAMLLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVF
RRVVQKLDGNNEMPSDSVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQT
YQTHFELCS

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28445; Mature: 28445

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MECLKIKLKRLVKHTILLIDNTFQGGESLSTINELVFLHQMAAPCHLALLAESIGLKTRV
CCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHH
VKHAAELDLDKSRRSFYLITQKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAM
HHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHEEEHHHCCCHHHHH
LLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDGNNEMPSDSVAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YQTHFELCS
HHHHHHHCC
>Mature Secondary Structure
MECLKIKLKRLVKHTILLIDNTFQGGESLSTINELVFLHQMAAPCHLALLAESIGLKTRV
CCHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHH
VKHAAELDLDKSRRSFYLITQKGSALDNKGIPLLASRLVSHFPVALYQVERDSLDQESAM
HHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCHHHEEEHHHCCCHHHHH
LLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDGNNEMPSDSVAM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWAQT
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
YQTHFELCS
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA