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The map label for this gene is cmpR [H]

Identifier: 126175639

GI number: 126175639

Start: 4035644

End: 4036642

Strand: Reverse

Name: cmpR [H]

Synonym: Sbal_3442

Alternate gene names: 126175639

Gene position: 4036642-4035644 (Counterclockwise)

Preceding gene: 126175641

Following gene: 126175635

Centisome position: 78.73

GC content: 50.45

Gene sequence:

>999_bases
ATGGATAAGCGTTCGTCATCGACTCAGCTTAAATTGCGGCACTTGAGTTTTAGGTTACTGCAGGTGTATGTGCAAGTGGT
GCGGTTAGGCAATATTTCCGCAGCGGCGAGGGCCTTGCATTTAACCCAACCCACAGTGTCATTACAGCTTAAAAAGCTGG
CCGATGTATTGGGTGAACCGTTACTTGAGAGTCGTGATGGCCGCATGTTACCGACCTTGATTGGCAATGAACTCTACCGC
GCCGCCTGCGATACCTTGAGTCGTTTTGAGGATTTCGATGCCTTTATGCAGCAGGCCAAAGGTGGCAGCGTTGGGCATAT
TAATATCGGTATCGTCACTACCGCCAAATACGTGTTACCACGGATTTTAGGGGCTTTTTATCGGCAGTTTCCACAGGTTA
AAGTGACCTTAAACATAGGTAACCGTGCCCATGTATTAGGTCGATTTGAGCGCCAAGAAGATGATTTATACCTGTTTAGT
CATCCTCCTAGTGGCGATAACGTCTTATCTGCGCGGATCATTAAAAACCCGCTGCAATTGATTGCGCCAAAAGATCATTG
GGCGGTGGGCCGTGAGCAAGTGAGTTTTAACGATCTTAAAAATGAGCGTTTTATCGTGCGCGAGCCAGGTTCTGCCACCC
GCTTGATGTTCGAGTCTTGGTGCAGCGGTCAAGGCATCACGCTTAGTGACACTATGCAAATTGAGAGCAATGAGGCGATA
CGCTTAAGCGTCGCGTCGGGCTTGGGGTTGTCGGTGATTTCGGCGCACACGCTGCAAGAAGGGCGCGAAAAACCGGCTAT
TTTGCCGGTAACGGGTTTTCCGCTCGAAAGTAACTGGTATCTGGTTGGCCGCAAAGATCGCCGCTTGCCCTATGCCGCCA
TGCAGCTGGTGGACTTTATGGCGGCGCATTTGGCCGAGTGTATCGAGCCCGAATGGGTTGCCGCCGATATCAGTGAATTG
GCTATGCACTTTAATCATGCGCCGCAAACTCGATCTTAG

Upstream 100 bases:

>100_bases
CAGGCTTAAATGTCGGGTGGTCCTGATGGCTGGTGATTTTGGACCTAATTGGTTATATTGAAAAATAAATTGTTTACCAC
TTAGGTATAGATAATTGTCT

Downstream 100 bases:

>100_bases
CTGAGTTCATGTTTTTGATACTGAATGATTTTATTAAGTTAGAGATGTGGTTATACATTGAGGGTAACGTCTTTTAGCAC
ATCTTGTGCGTTACCCTCTG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEPLLESRDGRMLPTLIGNELYR
AACDTLSRFEDFDAFMQQAKGGSVGHINIGIVTTAKYVLPRILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFS
HPPSGDNVLSARIIKNPLQLIAPKDHWAVGREQVSFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFMAAHLAECIEPEWVAADISEL
AMHFNHAPQTRS

Sequences:

>Translated_332_residues
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEPLLESRDGRMLPTLIGNELYR
AACDTLSRFEDFDAFMQQAKGGSVGHINIGIVTTAKYVLPRILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFS
HPPSGDNVLSARIIKNPLQLIAPKDHWAVGREQVSFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFMAAHLAECIEPEWVAADISEL
AMHFNHAPQTRS
>Mature_332_residues
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEPLLESRDGRMLPTLIGNELYR
AACDTLSRFEDFDAFMQQAKGGSVGHINIGIVTTAKYVLPRILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFS
HPPSGDNVLSARIIKNPLQLIAPKDHWAVGREQVSFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFMAAHLAECIEPEWVAADISEL
AMHFNHAPQTRS

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions. Specifically binds to the cmpR- cmpA intergenic region [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=255, Percent_Identity=24.7058823529412, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788481, Length=248, Percent_Identity=24.5967741935484, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=26.7489711934156, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI157672245, Length=227, Percent_Identity=23.7885462555066, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=24.4, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788887, Length=260, Percent_Identity=23.4615384615385, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787601, Length=290, Percent_Identity=22.7586206896552, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790208, Length=285, Percent_Identity=26.6666666666667, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788748, Length=291, Percent_Identity=23.0240549828179, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=23.8095238095238, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37129; Mature: 37129

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCHHHHHHHHHHHHHCCH
LLESRDGRMLPTLIGNELYRAACDTLSRFEDFDAFMQQAKGGSVGHINIGIVTTAKYVLP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHH
RILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFSHPPSGDNVLSARIIKNPLQL
HHHHHHHHHCCCEEEEEEECCCEEEHECCCCCCCCEEEEECCCCCCCEEHHHHHHCHHHH
IAPKDHWAVGREQVSFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
CCCCCHHHCCCCCCCHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECEEEECCCCEE
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFM
EEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHH
AAHLAECIEPEWVAADISELAMHFNHAPQTRS
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MDKRSSSTQLKLRHLSFRLLQVYVQVVRLGNISAAARALHLTQPTVSLQLKKLADVLGEP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCHHHHHHHHHHHHHCCH
LLESRDGRMLPTLIGNELYRAACDTLSRFEDFDAFMQQAKGGSVGHINIGIVTTAKYVLP
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHH
RILGAFYRQFPQVKVTLNIGNRAHVLGRFERQEDDLYLFSHPPSGDNVLSARIIKNPLQL
HHHHHHHHHCCCEEEEEEECCCEEEHECCCCCCCCEEEEECCCCCCCEEHHHHHHCHHHH
IAPKDHWAVGREQVSFNDLKNERFIVREPGSATRLMFESWCSGQGITLSDTMQIESNEAI
CCCCCHHHCCCCCCCHHHCCCCEEEEECCCCHHHHHHHHHCCCCCEEEECEEEECCCCEE
RLSVASGLGLSVISAHTLQEGREKPAILPVTGFPLESNWYLVGRKDRRLPYAAMQLVDFM
EEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEECCCCCCCHHHHHHHHHHH
AAHLAECIEPEWVAADISELAMHFNHAPQTRS
HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]