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The map label for this gene is yddE [C]

Identifier: 126175515

GI number: 126175515

Start: 3881054

End: 3881962

Strand: Reverse

Name: yddE [C]

Synonym: Sbal_3317

Alternate gene names: 126175515

Gene position: 3881962-3881054 (Counterclockwise)

Preceding gene: 126175516

Following gene: 126175514

Centisome position: 75.71

GC content: 41.69

Gene sequence:

>909_bases
TTGTCGTCAGTATTTAACAGTACAATAACGGTCATTTCTGTTTCCAAAGTTCGCTTCCATACTAACGCTAATTCGTTAAT
ATGGGACTGTAAAACGAAATGGTTAAAGGGAGATAAAGATATACAATCATATATTTACGACGTCTTTTGTGACGAGAGTG
CAGTTGGAAACCCTTGTGGTGTTGTCATTTTAGATGAATGGCTAACTGACAGTGAATTATTGGCGTTAACCAATGAACTG
GCTCAGCCAGTGACATCCTTTGTCGTTGAAAATGCACAGGGATATTGGATCCGTTGGTTTTCACTTTCCTGTGAAATCAA
TCTTTGCGGTCATGGCAGCTTAGGTGCGGGCGCGGCAATTGCAGAGCATTTTGGTCGTCAGTTAGTGATACTGCAGAGTC
AATATGGAAATGTCGTTATTTCAAAGCAGAACGAATTTTATCAAATCGCGCTGCCATCGTGGGATGCGAAGTTAAGCGAG
TTAGACATCACTCCATTTGGTTTGAACCATTCTGTTAAGGATCAATTTACGACCAGAGATCTTGTGATTGTGCTGGATTC
AGAAGAAGCGGTCAGACATTTTGAACCTGACTTCGGGAGATTAATGCAGATTGAGGACTATCATGCATTTATTGTCACTG
CTCAAAGTGGACCAACAGAGTATGTGTTGAGGTATTTCGCTCCGAAAATAGGTATTCCTGAAGATTTAGCAACGGGCTCT
GCACAGTGCTCTTTGGCGCCATATTGGTTTGATAAACTCAAGTCAGATAGTTTGAGTGTTCGTCAACTATCTAGTAGCGG
TGGTTACTTTCAAGTCGACAAATGTGCGACGGATTCGATTCTGGTTTCCGCTTATGTAAAACAGCGGATAGGTGCAGTTA
TTTGCATCGAGAACTTTGCAGTGCTTTAA

Upstream 100 bases:

>100_bases
GATATGAACGGTAAATTATTAAGGTATAAAAGTTATGCCTGTCTGATCTTTATCCGGCAACTCCTAGGGTAGGGGGGATT
CCTTTAGCTTCATAGTTGTT

Downstream 100 bases:

>100_bases
AGTGTTCAGCTATACAGCTGTTTGATAAGTTAATATATAATTCCGCATGAATAGACATTTTAATTTAACTAATGGAATAA
GACCGAATGTTAGGGAATAA

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MSSVFNSTITVISVSKVRFHTNANSLIWDCKTKWLKGDKDIQSYIYDVFCDESAVGNPCGVVILDEWLTDSELLALTNEL
AQPVTSFVVENAQGYWIRWFSLSCEINLCGHGSLGAGAAIAEHFGRQLVILQSQYGNVVISKQNEFYQIALPSWDAKLSE
LDITPFGLNHSVKDQFTTRDLVIVLDSEEAVRHFEPDFGRLMQIEDYHAFIVTAQSGPTEYVLRYFAPKIGIPEDLATGS
AQCSLAPYWFDKLKSDSLSVRQLSSSGGYFQVDKCATDSILVSAYVKQRIGAVICIENFAVL

Sequences:

>Translated_302_residues
MSSVFNSTITVISVSKVRFHTNANSLIWDCKTKWLKGDKDIQSYIYDVFCDESAVGNPCGVVILDEWLTDSELLALTNEL
AQPVTSFVVENAQGYWIRWFSLSCEINLCGHGSLGAGAAIAEHFGRQLVILQSQYGNVVISKQNEFYQIALPSWDAKLSE
LDITPFGLNHSVKDQFTTRDLVIVLDSEEAVRHFEPDFGRLMQIEDYHAFIVTAQSGPTEYVLRYFAPKIGIPEDLATGS
AQCSLAPYWFDKLKSDSLSVRQLSSSGGYFQVDKCATDSILVSAYVKQRIGAVICIENFAVL
>Mature_301_residues
SSVFNSTITVISVSKVRFHTNANSLIWDCKTKWLKGDKDIQSYIYDVFCDESAVGNPCGVVILDEWLTDSELLALTNELA
QPVTSFVVENAQGYWIRWFSLSCEINLCGHGSLGAGAAIAEHFGRQLVILQSQYGNVVISKQNEFYQIALPSWDAKLSEL
DITPFGLNHSVKDQFTTRDLVIVLDSEEAVRHFEPDFGRLMQIEDYHAFIVTAQSGPTEYVLRYFAPKIGIPEDLATGSA
QCSLAPYWFDKLKSDSLSVRQLSSSGGYFQVDKCATDSILVSAYVKQRIGAVICIENFAVL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Caenorhabditis elegans, GI17542160, Length=295, Percent_Identity=26.4406779661017, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17542154, Length=295, Percent_Identity=26.4406779661017, Blast_Score=95, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 33611; Mature: 33480

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSVFNSTITVISVSKVRFHTNANSLIWDCKTKWLKGDKDIQSYIYDVFCDESAVGNPCG
CCCHHCCEEEEEEEEEEEEECCCCCEEEECCHHHCCCCHHHHHHHHHHHCCCCCCCCCEE
VVILDEWLTDSELLALTNELAQPVTSFVVENAQGYWIRWFSLSCEINLCGHGSLGAGAAI
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCCHHHH
AEHFGRQLVILQSQYGNVVISKQNEFYQIALPSWDAKLSELDITPFGLNHSVKDQFTTRD
HHHCCCEEEEEEECCCCEEEECCCCEEEEEECCCCCCHHEEECCCCCCCCCCCCCCCCCE
LVIVLDSEEAVRHFEPDFGRLMQIEDYHAFIVTAQSGPTEYVLRYFAPKIGIPEDLATGS
EEEEECCHHHHHHCCCCHHHEEEEECEEEEEEEECCCCHHHHHHHHCCCCCCCHHHCCCC
AQCSLAPYWFDKLKSDSLSVRQLSSSGGYFQVDKCATDSILVSAYVKQRIGAVICIENFA
CCEEECHHHHHHHCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEECCEE
VL
CC
>Mature Secondary Structure 
SSVFNSTITVISVSKVRFHTNANSLIWDCKTKWLKGDKDIQSYIYDVFCDESAVGNPCG
CCHHCCEEEEEEEEEEEEECCCCCEEEECCHHHCCCCHHHHHHHHHHHCCCCCCCCCEE
VVILDEWLTDSELLALTNELAQPVTSFVVENAQGYWIRWFSLSCEINLCGHGSLGAGAAI
EEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCCHHHH
AEHFGRQLVILQSQYGNVVISKQNEFYQIALPSWDAKLSELDITPFGLNHSVKDQFTTRD
HHHCCCEEEEEEECCCCEEEECCCCEEEEEECCCCCCHHEEECCCCCCCCCCCCCCCCCE
LVIVLDSEEAVRHFEPDFGRLMQIEDYHAFIVTAQSGPTEYVLRYFAPKIGIPEDLATGS
EEEEECCHHHHHHCCCCHHHEEEEECEEEEEEEECCCCHHHHHHHHCCCCCCCHHHCCCC
AQCSLAPYWFDKLKSDSLSVRQLSSSGGYFQVDKCATDSILVSAYVKQRIGAVICIENFA
CCEEECHHHHHHHCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEECCEE
VL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]