Click here to switch to the map view.

The map label for this gene is ybfI [H]

Identifier: 126175376

GI number: 126175376

Start: 3718074

End: 3718937

Strand: Direct

Name: ybfI [H]

Synonym: Sbal_3175

Alternate gene names: 126175376

Gene position: 3718074-3718937 (Clockwise)

Preceding gene: 126175374

Following gene: 126175377

Centisome position: 72.51

GC content: 47.45

Gene sequence:

>864_bases
ATGGAGCCCAAATACACCAGTTTTGATAAATCTGCTAAAACCTGTATTCGCCAACAAGTGATTACGGAGGATTTATCTTG
GGCCCATTATCAAAATGCGGGCGAGCGTTTGTATTACCAAAACGATACACAACACACGCTGAGCATGTATCTGGATGGCG
GCTACGAAACCCACAGAACCGATATCAAAGCCGACTATGGCGCGCCCAGCAAGTTTTGCCTTATGCCCCAAGGCTGCCAA
AGCCATTGGCAACTGGGGCAACCGCAGCAGTTTATGCATTTGTATTTTAGCGATGAACATCTGAAGAAACTGGCAGTGCG
GGTCTTTGATAAAGATCCACGCCAAGTGCGTTTACCTGAGCTGACCTTTGTCGATAATCCGAGGTTAGAGGCGCTATTTC
GGCATCAAGTTGCCGGGCTCAATTGGCAGACCAGTGATAACCATCTGATGATGGAACAGGTAACCGACACTGTGCTGGTG
ACGTTACTACAAAGTTCCGGCTTTAATTTGTCGGTGGGGCCAATCAAGGGCGGGCTAGCACCTAAAGTGGCTAAAGCGAT
CAAAGAGTTTATTTATTGCCATTCACATCGGCAGATTTACTTGTCTGAACTGGCCGAGATTGCCCAGCTTAGCGAGTACC
ATTTTTGCCGCATGTTTAAATGCCAATTTGCGATGACGCCGCAGGAGTATTTGCTGCAAGTGCGCATCGAAAAGGTCAAA
CAAAGCTTGAGCCATTCAACGCAATCATTGACCGATATCGCCCTCAATAATGGCTTCGCTAATCAAAGCCATATGGGCCG
TTACTTTAAAAAACTCAGCGGCATGTCACCGGGCGAATATCAAAAGCATCATCAAGGCCGCTAA

Upstream 100 bases:

>100_bases
CGATATTGCGGTTTTAATCGTGAGCGAACGTTGAGCCGCATTAATAAGTGCGATAATTTGGACAGACAAAACACTTAGCC
AGTGAGATAACAAGGACCCC

Downstream 100 bases:

>100_bases
GGTACTCAAGTGATTTCCCTGCTCGATTCAATCCTGCGTTAATCTTTGCCCACAGCCTGAGTTAAGGCACGCTGGTTAAA
CTCGGCATTAAAGGGATTAC

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MEPKYTSFDKSAKTCIRQQVITEDLSWAHYQNAGERLYYQNDTQHTLSMYLDGGYETHRTDIKADYGAPSKFCLMPQGCQ
SHWQLGQPQQFMHLYFSDEHLKKLAVRVFDKDPRQVRLPELTFVDNPRLEALFRHQVAGLNWQTSDNHLMMEQVTDTVLV
TLLQSSGFNLSVGPIKGGLAPKVAKAIKEFIYCHSHRQIYLSELAEIAQLSEYHFCRMFKCQFAMTPQEYLLQVRIEKVK
QSLSHSTQSLTDIALNNGFANQSHMGRYFKKLSGMSPGEYQKHHQGR

Sequences:

>Translated_287_residues
MEPKYTSFDKSAKTCIRQQVITEDLSWAHYQNAGERLYYQNDTQHTLSMYLDGGYETHRTDIKADYGAPSKFCLMPQGCQ
SHWQLGQPQQFMHLYFSDEHLKKLAVRVFDKDPRQVRLPELTFVDNPRLEALFRHQVAGLNWQTSDNHLMMEQVTDTVLV
TLLQSSGFNLSVGPIKGGLAPKVAKAIKEFIYCHSHRQIYLSELAEIAQLSEYHFCRMFKCQFAMTPQEYLLQVRIEKVK
QSLSHSTQSLTDIALNNGFANQSHMGRYFKKLSGMSPGEYQKHHQGR
>Mature_287_residues
MEPKYTSFDKSAKTCIRQQVITEDLSWAHYQNAGERLYYQNDTQHTLSMYLDGGYETHRTDIKADYGAPSKFCLMPQGCQ
SHWQLGQPQQFMHLYFSDEHLKKLAVRVFDKDPRQVRLPELTFVDNPRLEALFRHQVAGLNWQTSDNHLMMEQVTDTVLV
TLLQSSGFNLSVGPIKGGLAPKVAKAIKEFIYCHSHRQIYLSELAEIAQLSEYHFCRMFKCQFAMTPQEYLLQVRIEKVK
QSLSHSTQSLTDIALNNGFANQSHMGRYFKKLSGMSPGEYQKHHQGR

Specific function: Transcription Activator For The Expression Of The Melab Operon. Melr Binds At Two Sites Located Upstream Of The Melab Transcription Site. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33204; Mature: 33204

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPKYTSFDKSAKTCIRQQVITEDLSWAHYQNAGERLYYQNDTQHTLSMYLDGGYETHRT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCEECCC
DIKADYGAPSKFCLMPQGCQSHWQLGQPQQFMHLYFSDEHLKKLAVRVFDKDPRQVRLPE
CCEECCCCCCCEEECCCCCHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEECCE
LTFVDNPRLEALFRHQVAGLNWQTSDNHLMMEQVTDTVLVTLLQSSGFNLSVGPIKGGLA
EEECCCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
PKVAKAIKEFIYCHSHRQIYLSELAEIAQLSEYHFCRMFKCQFAMTPQEYLLQVRIEKVK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
QSLSHSTQSLTDIALNNGFANQSHMGRYFKKLSGMSPGEYQKHHQGR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCC
>Mature Secondary Structure
MEPKYTSFDKSAKTCIRQQVITEDLSWAHYQNAGERLYYQNDTQHTLSMYLDGGYETHRT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCCCEECCC
DIKADYGAPSKFCLMPQGCQSHWQLGQPQQFMHLYFSDEHLKKLAVRVFDKDPRQVRLPE
CCEECCCCCCCEEECCCCCHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCEEECCE
LTFVDNPRLEALFRHQVAGLNWQTSDNHLMMEQVTDTVLVTLLQSSGFNLSVGPIKGGLA
EEECCCCHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
PKVAKAIKEFIYCHSHRQIYLSELAEIAQLSEYHFCRMFKCQFAMTPQEYLLQVRIEKVK
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
QSLSHSTQSLTDIALNNGFANQSHMGRYFKKLSGMSPGEYQKHHQGR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]