Click here to switch to the map view.

The map label for this gene is mdcF [H]

Identifier: 126175353

GI number: 126175353

Start: 3691431

End: 3692393

Strand: Direct

Name: mdcF [H]

Synonym: Sbal_3152

Alternate gene names: 126175353

Gene position: 3691431-3692393 (Clockwise)

Preceding gene: 126175351

Following gene: 126175354

Centisome position: 71.99

GC content: 49.53

Gene sequence:

>963_bases
ATGACCATTTTAACCCCTCTGTTTGCCGTCTTCGGGATCATGTTGCTCGGCACACTAGTGCAAAAATTAAAACTCTTGCC
CGTCGATACGGATCAAGTGCTAAACCAATATGTGTACTATATTGCGTTCCCTGCAATAATGCTTATCGCCCTCGCCCAGC
AGCCAATTGGCGAGATTTTGCAATGGGGATTTATTGCGGGCTACAGCACGGCTATGGTGATCACTTATCTTGTCTGCCTT
GGGCTCTCGCTGCTTGCTAACCCGAAACAGCATGCGGTTGCCGCCATTCGAGCCCTTAATGCCACCTTTGGTAATACCGC
ATTTATTGGTATTCCACTGCTCATCATCTTATTCCCGCAGCAGCAAAGTGCCTTAGTTGCCGCCGCGATTGCCAGCTTAT
TATCCGTGCTGATGTTTGCCGTCGCCTTAGTCTCGATGGAACTGGCCACTAACACCCAAAGACAACACCATGCCTTAGTC
ATAATGGCGATGGCGGTCGGTAAAAACCCTATCGTTATTGGTAGTTTGATTGGCGTCGGCATTTCGGCGCTAGAGATAAA
ACTGCCTTCAGGACTGGCGCTAATGATCCAGCAAATTGGCAATACCTCAAGCCCGTGCGCGCTGTTTGCCATCGGCATGG
TGCTCGCCAAAGCGATGCGCTACCAGAAAGATAGCAGCGTATTTAGCCCCAAGAATTTTATCGAACTGAGCCTTATCAAC
CTCTTCAAGCTGGTTATCCAACCGGCACTCGTCTACTTTATGCTTTGCCGTTTTGGCGTGAGCGGCGACTACCTGATCAT
GGGCGTGATCTTGAGCGCACTGCCCACTGCGGCGAGCGTGTACTTGCTCGCCCAGCGCTATAACACTCAAGCTTCAACCA
GTGCTCAGGGCATTCTATTTGGCACCTTAGTCACTTTTTTCAGTTTACCTATCTTAGAAAGCTTAGTAAGAACCCATGCA
TAA

Upstream 100 bases:

>100_bases
ACATAAAAAAGGCAAGCGCCCACCTAGAATCATAGCGATAGTAGAAATGACGGTGGTGGCTGAGTTTATTCAAATTTAAT
CGTAAGGATGAGTGAGGGAA

Downstream 100 bases:

>100_bases
TCAGTTAATTAAAAATATTTACTGCCAATAATGCCGATTATTTACCCAAGCCACTTTACTGTATATAAAATCAGTATATA
CTGTTTATCAATACAGTGGT

Product: auxin efflux carrier

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MTILTPLFAVFGIMLLGTLVQKLKLLPVDTDQVLNQYVYYIAFPAIMLIALAQQPIGEILQWGFIAGYSTAMVITYLVCL
GLSLLANPKQHAVAAIRALNATFGNTAFIGIPLLIILFPQQQSALVAAAIASLLSVLMFAVALVSMELATNTQRQHHALV
IMAMAVGKNPIVIGSLIGVGISALEIKLPSGLALMIQQIGNTSSPCALFAIGMVLAKAMRYQKDSSVFSPKNFIELSLIN
LFKLVIQPALVYFMLCRFGVSGDYLIMGVILSALPTAASVYLLAQRYNTQASTSAQGILFGTLVTFFSLPILESLVRTHA

Sequences:

>Translated_320_residues
MTILTPLFAVFGIMLLGTLVQKLKLLPVDTDQVLNQYVYYIAFPAIMLIALAQQPIGEILQWGFIAGYSTAMVITYLVCL
GLSLLANPKQHAVAAIRALNATFGNTAFIGIPLLIILFPQQQSALVAAAIASLLSVLMFAVALVSMELATNTQRQHHALV
IMAMAVGKNPIVIGSLIGVGISALEIKLPSGLALMIQQIGNTSSPCALFAIGMVLAKAMRYQKDSSVFSPKNFIELSLIN
LFKLVIQPALVYFMLCRFGVSGDYLIMGVILSALPTAASVYLLAQRYNTQASTSAQGILFGTLVTFFSLPILESLVRTHA
>Mature_319_residues
TILTPLFAVFGIMLLGTLVQKLKLLPVDTDQVLNQYVYYIAFPAIMLIALAQQPIGEILQWGFIAGYSTAMVITYLVCLG
LSLLANPKQHAVAAIRALNATFGNTAFIGIPLLIILFPQQQSALVAAAIASLLSVLMFAVALVSMELATNTQRQHHALVI
MAMAVGKNPIVIGSLIGVGISALEIKLPSGLALMIQQIGNTSSPCALFAIGMVLAKAMRYQKDSSVFSPKNFIELSLINL
FKLVIQPALVYFMLCRFGVSGDYLIMGVILSALPTAASVYLLAQRYNTQASTSAQGILFGTLVTFFSLPILESLVRTHA

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004776 [H]

Pfam domain/function: PF03547 Mem_trans [H]

EC number: NA

Molecular weight: Translated: 34339; Mature: 34208

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTILTPLFAVFGIMLLGTLVQKLKLLPVDTDQVLNQYVYYIAFPAIMLIALAQQPIGEIL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWGFIAGYSTAMVITYLVCLGLSLLANPKQHAVAAIRALNATFGNTAFIGIPLLIILFPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
QQSALVAAAIASLLSVLMFAVALVSMELATNTQRQHHALVIMAMAVGKNPIVIGSLIGVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHCC
ISALEIKLPSGLALMIQQIGNTSSPCALFAIGMVLAKAMRYQKDSSVFSPKNFIELSLIN
HHHEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LFKLVIQPALVYFMLCRFGVSGDYLIMGVILSALPTAASVYLLAQRYNTQASTSAQGILF
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GTLVTFFSLPILESLVRTHA
HHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TILTPLFAVFGIMLLGTLVQKLKLLPVDTDQVLNQYVYYIAFPAIMLIALAQQPIGEIL
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QWGFIAGYSTAMVITYLVCLGLSLLANPKQHAVAAIRALNATFGNTAFIGIPLLIILFPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
QQSALVAAAIASLLSVLMFAVALVSMELATNTQRQHHALVIMAMAVGKNPIVIGSLIGVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEHHHHHCC
ISALEIKLPSGLALMIQQIGNTSSPCALFAIGMVLAKAMRYQKDSSVFSPKNFIELSLIN
HHHEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
LFKLVIQPALVYFMLCRFGVSGDYLIMGVILSALPTAASVYLLAQRYNTQASTSAQGILF
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
GTLVTFFSLPILESLVRTHA
HHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10858449; 11481430 [H]