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The map label for this gene is 126175336

Identifier: 126175336

GI number: 126175336

Start: 3672055

End: 3672765

Strand: Reverse

Name: 126175336

Synonym: Sbal_3135

Alternate gene names: NA

Gene position: 3672765-3672055 (Counterclockwise)

Preceding gene: 126175337

Following gene: 126175335

Centisome position: 71.63

GC content: 32.63

Gene sequence:

>711_bases
GTGCAGTATAAAAAACATGCTGAACAGCATAAGAAGTGTAAGTATCTATTAAGGTTGGATTTCAAAAACTTCTTTGAATC
GATTTCAGAAATTGATATTCGTTGTTTTGCAAGAAAGAATCTTATTGGAGTAATTAAAGGTTGGTCAGAAGAAGATACTA
AACTTCTTGTAGAATTAGCTACGTTCAAAGGTGGGTTGACTATTGGATCTATTACATCCCCTCTCTTGTCTGATGCTCTA
TGTTATCAATTAGATGTTGCATTGTTTAGCCTGTCACATGTACTAGGTGTCACCTATACTAGATATGCTGATGATTTGTA
TTTCTCTACAAACCATCGTAACATTTTGAAAAATATCCCTTCCAATGTCGATAGTATTATTAAAAAACTAGAGTACCCTA
ATAGGTTAGAAATAAATCATAGCAAGACAAATCATTCATCAAAGAAAAATAGAATGATGGTAACTGGATTAACACTTACT
AATGATTTTAATGTGTCGATTGGTCGCTCAAAAAAAAGAGAAATACGGAGCAAGATCTATAAGTGGTCCGAATTAAATAA
AGATGATAAGTTGCACCTTTCAGGCTACCTCTCCTATATAAAGTCAGTTGAACCGTCATTTATAAATACTTTGTGTGGTA
AGTATGGTGCAACGATCATACAGAATATCATTACGTTCAACAGTAAAAAGGATACTAATCTAAAATCCTAA

Upstream 100 bases:

>100_bases
ATCATCCGTCAAAAGAGCTGAAAGGAATACAGCGGGTTATACATAACGAGCTTCTTCAAAAACTGCCTACCCACCCAGCT
AGCGCGGCATACAAACAAGG

Downstream 100 bases:

>100_bases
GTTGCTGGGTCGGTTGCACTAGACGGACCTAACTATCATCCATCAGTCCTTGTGCTACCTGCATTTCCCTGCAGCTTTCT
CGTAATCAAACCACCAATTT

Product: putative reverse transcriptase

Products: NA

Alternate protein names: EC86-RT; Reverse transcriptase [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MQYKKHAEQHKKCKYLLRLDFKNFFESISEIDIRCFARKNLIGVIKGWSEEDTKLLVELATFKGGLTIGSITSPLLSDAL
CYQLDVALFSLSHVLGVTYTRYADDLYFSTNHRNILKNIPSNVDSIIKKLEYPNRLEINHSKTNHSSKKNRMMVTGLTLT
NDFNVSIGRSKKREIRSKIYKWSELNKDDKLHLSGYLSYIKSVEPSFINTLCGKYGATIIQNIITFNSKKDTNLKS

Sequences:

>Translated_236_residues
MQYKKHAEQHKKCKYLLRLDFKNFFESISEIDIRCFARKNLIGVIKGWSEEDTKLLVELATFKGGLTIGSITSPLLSDAL
CYQLDVALFSLSHVLGVTYTRYADDLYFSTNHRNILKNIPSNVDSIIKKLEYPNRLEINHSKTNHSSKKNRMMVTGLTLT
NDFNVSIGRSKKREIRSKIYKWSELNKDDKLHLSGYLSYIKSVEPSFINTLCGKYGATIIQNIITFNSKKDTNLKS
>Mature_236_residues
MQYKKHAEQHKKCKYLLRLDFKNFFESISEIDIRCFARKNLIGVIKGWSEEDTKLLVELATFKGGLTIGSITSPLLSDAL
CYQLDVALFSLSHVLGVTYTRYADDLYFSTNHRNILKNIPSNVDSIIKKLEYPNRLEINHSKTNHSSKKNRMMVTGLTLT
NDFNVSIGRSKKREIRSKIYKWSELNKDDKLHLSGYLSYIKSVEPSFINTLCGKYGATIIQNIITFNSKKDTNLKS

Specific function: Participates in the synthesis of a msDNA (a branched RNA linked by a 2',5'-phosphodiester linkage to a single-stranded DNA) of unknown function. The retron transcript serves as primer and template to the reaction, and codes for the RT [H]

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000123
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: =2.7.7.49 [H]

Molecular weight: Translated: 27144; Mature: 27144

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYKKHAEQHKKCKYLLRLDFKNFFESISEIDIRCFARKNLIGVIKGWSEEDTKLLVELA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH
TFKGGLTIGSITSPLLSDALCYQLDVALFSLSHVLGVTYTRYADDLYFSTNHRNILKNIP
HHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHCC
SNVDSIIKKLEYPNRLEINHSKTNHSSKKNRMMVTGLTLTNDFNVSIGRSKKREIRSKIY
CCHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCEECCCHHHHHHHHHHH
KWSELNKDDKLHLSGYLSYIKSVEPSFINTLCGKYGATIIQNIITFNSKKDTNLKS
HHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MQYKKHAEQHKKCKYLLRLDFKNFFESISEIDIRCFARKNLIGVIKGWSEEDTKLLVELA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHH
TFKGGLTIGSITSPLLSDALCYQLDVALFSLSHVLGVTYTRYADDLYFSTNHRNILKNIP
HHCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHCC
SNVDSIIKKLEYPNRLEINHSKTNHSSKKNRMMVTGLTLTNDFNVSIGRSKKREIRSKIY
CCHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEEEEEECCCCEECCCHHHHHHHHHHH
KWSELNKDDKLHLSGYLSYIKSVEPSFINTLCGKYGATIIQNIITFNSKKDTNLKS
HHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2466573; 1722556 [H]