Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 126175311

GI number: 126175311

Start: 3638844

End: 3639887

Strand: Direct

Name: yciR [C]

Synonym: Sbal_3110

Alternate gene names: 126175311

Gene position: 3638844-3639887 (Clockwise)

Preceding gene: 126175310

Following gene: 126175312

Centisome position: 70.97

GC content: 43.1

Gene sequence:

>1044_bases
ATGAGCGATAAACCAATAAACGATCTGCATATCATCCAACGCCTACGTAGCCAGATTGAGCAATTAGAAAATCTCGAGAA
ACGCATTAATACCCTTGAACAAGAACGCTCTACGCTTACTCACACGACTGAGTGCCTACAAGCAGAATTAATCCGTCATC
AGCAAATTAAAGCAGACTGGGAGTGGTTTTTTGAAAACTCACTCGATTTACTCTGCATTGCGGCACTTGATGGTTACTTT
AAAAGAGTTAATCCTGCTTTTGCGGCGACACTAGGTTTCACTCAAAACGAATTATTAGCCAAACCTATTACTGAGCTTAT
TCATCCGGATGACCTGGAGATTACAGTGCAAGCCTTACAAGGTTTAGGTTCTGGCCAAGATTGCATTAATTTTGAAAACC
GCTATATCGATAATCAAGGTCAGTGGCACTGGCTTTCTTGGCGCTGCCCCGCACTGAGCGAGAACACGAGCCAACTCTAC
GCCATTGCACGTGATGTTACCGATTATAAACGCAGCGCCGCTGAAATTATGTATCAAGCCACCCACGACCCGTTAACCGA
CTTGTATAATAGAGCCGCATTCGACAATGAACTAAATAATTGCTTGCTCAGGGCACAACGACACCCAACCAACCATGTAG
CCTTGTTGCTGATCGATTTAGACGATTTCAAACAAGTTAATGATAGCTATGGCCATCAAACAGGTGATCAGTTACTGCAA
GCTTTGGCACAACGATTTAAAAACATGCAACGGAAAAATGATTTTGTGTGTCGCTTAGGTGGGGATGAATTTGCTTGGTT
GGCCGAAGCCAATAACATTATCGCCGTAGAAGCCCTATTAGCTCGTATCCTCAAAGAGTTACAAAAACCAGTACCTTTAG
AAAAGGTGACCCTCAAGGTAAGTTGTAGCATAGGAGCATCACTCTTCCCCAACTTAGCCCAGGATGCCAAAACCCTATTT
CATCAAGCTGATGGCAGCATGTATCAAATTAAGCGCAGTGGTAAAGGTGGTTGTTTCATTTATCACTCATCTATTGATGC
ATAA

Upstream 100 bases:

>100_bases
CTCCATAACTCTCAGGACGAAATTACGATATTCAAACTGGGCACTGAACGCTCATTAATGGAAGAGTCTGCTAATTGCTG
AATGCATTACAGGTGATCTC

Downstream 100 bases:

>100_bases
CCGACTCACATGCTAGACAGTGCCCACTCTCAGAGCCTAGATGGTAGTAATCGAGACAGAGACCTGTAATGGTCACAAGC
ATTTTCAATCTGTCTCTGTC

Product: diguanylate cyclase with PAS/PAC sensor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 347; Mature: 346

Protein sequence:

>347_residues
MSDKPINDLHIIQRLRSQIEQLENLEKRINTLEQERSTLTHTTECLQAELIRHQQIKADWEWFFENSLDLLCIAALDGYF
KRVNPAFAATLGFTQNELLAKPITELIHPDDLEITVQALQGLGSGQDCINFENRYIDNQGQWHWLSWRCPALSENTSQLY
AIARDVTDYKRSAAEIMYQATHDPLTDLYNRAAFDNELNNCLLRAQRHPTNHVALLLIDLDDFKQVNDSYGHQTGDQLLQ
ALAQRFKNMQRKNDFVCRLGGDEFAWLAEANNIIAVEALLARILKELQKPVPLEKVTLKVSCSIGASLFPNLAQDAKTLF
HQADGSMYQIKRSGKGGCFIYHSSIDA

Sequences:

>Translated_347_residues
MSDKPINDLHIIQRLRSQIEQLENLEKRINTLEQERSTLTHTTECLQAELIRHQQIKADWEWFFENSLDLLCIAALDGYF
KRVNPAFAATLGFTQNELLAKPITELIHPDDLEITVQALQGLGSGQDCINFENRYIDNQGQWHWLSWRCPALSENTSQLY
AIARDVTDYKRSAAEIMYQATHDPLTDLYNRAAFDNELNNCLLRAQRHPTNHVALLLIDLDDFKQVNDSYGHQTGDQLLQ
ALAQRFKNMQRKNDFVCRLGGDEFAWLAEANNIIAVEALLARILKELQKPVPLEKVTLKVSCSIGASLFPNLAQDAKTLF
HQADGSMYQIKRSGKGGCFIYHSSIDA
>Mature_346_residues
SDKPINDLHIIQRLRSQIEQLENLEKRINTLEQERSTLTHTTECLQAELIRHQQIKADWEWFFENSLDLLCIAALDGYFK
RVNPAFAATLGFTQNELLAKPITELIHPDDLEITVQALQGLGSGQDCINFENRYIDNQGQWHWLSWRCPALSENTSQLYA
IARDVTDYKRSAAEIMYQATHDPLTDLYNRAAFDNELNNCLLRAQRHPTNHVALLLIDLDDFKQVNDSYGHQTGDQLLQA
LAQRFKNMQRKNDFVCRLGGDEFAWLAEANNIIAVEALLARILKELQKPVPLEKVTLKVSCSIGASLFPNLAQDAKTLFH
QADGSMYQIKRSGKGGCFIYHSSIDA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=217, Percent_Identity=29.9539170506912, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1788381, Length=181, Percent_Identity=35.9116022099448, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI145693134, Length=172, Percent_Identity=33.1395348837209, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87081977, Length=181, Percent_Identity=30.939226519337, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=31.0975609756098, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=30.6010928961749, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081881, Length=280, Percent_Identity=26.7857142857143, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI87082007, Length=307, Percent_Identity=26.7100977198697, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=28.9156626506024, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=35, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081974, Length=115, Percent_Identity=40, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787816, Length=199, Percent_Identity=30.1507537688442, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788085, Length=205, Percent_Identity=22.4390243902439, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081921, Length=164, Percent_Identity=23.780487804878, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 39573; Mature: 39442

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS50112 PAS ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDKPINDLHIIQRLRSQIEQLENLEKRINTLEQERSTLTHTTECLQAELIRHQQIKADW
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWFFENSLDLLCIAALDGYFKRVNPAFAATLGFTQNELLAKPITELIHPDDLEITVQALQ
HHHHCCCCCEEHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
GLGSGQDCINFENRYIDNQGQWHWLSWRCPALSENTSQLYAIARDVTDYKRSAAEIMYQA
CCCCCCHHHCCHHHEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
THDPLTDLYNRAAFDNELNNCLLRAQRHPTNHVALLLIDLDDFKQVNDSYGHQTGDQLLQ
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHCCCCCHHHHHH
ALAQRFKNMQRKNDFVCRLGGDEFAWLAEANNIIAVEALLARILKELQKPVPLEKVTLKV
HHHHHHHHHHHCCCEEEEECCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCHHHEEEEE
SCSIGASLFPNLAQDAKTLFHQADGSMYQIKRSGKGGCFIYHSSIDA
EECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCC
>Mature Secondary Structure 
SDKPINDLHIIQRLRSQIEQLENLEKRINTLEQERSTLTHTTECLQAELIRHQQIKADW
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWFFENSLDLLCIAALDGYFKRVNPAFAATLGFTQNELLAKPITELIHPDDLEITVQALQ
HHHHCCCCCEEHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHH
GLGSGQDCINFENRYIDNQGQWHWLSWRCPALSENTSQLYAIARDVTDYKRSAAEIMYQA
CCCCCCHHHCCHHHEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
THDPLTDLYNRAAFDNELNNCLLRAQRHPTNHVALLLIDLDDFKQVNDSYGHQTGDQLLQ
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHCCCCCHHHHHH
ALAQRFKNMQRKNDFVCRLGGDEFAWLAEANNIIAVEALLARILKELQKPVPLEKVTLKV
HHHHHHHHHHHCCCEEEEECCCCEEEEECCCCEEHHHHHHHHHHHHHHCCCCHHHEEEEE
SCSIGASLFPNLAQDAKTLFHQADGSMYQIKRSGKGGCFIYHSSIDA
EECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]