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The map label for this gene is fliR [H]

Identifier: 126175116

GI number: 126175116

Start: 3429720

End: 3430517

Strand: Reverse

Name: fliR [H]

Synonym: Sbal_2914

Alternate gene names: 126175116

Gene position: 3430517-3429720 (Counterclockwise)

Preceding gene: 126175117

Following gene: 126175115

Centisome position: 66.91

GC content: 46.37

Gene sequence:

>798_bases
ATGGAGCTGCTGCTCGATACCTTAATGCAGACCATTGCCGCTTATATGTGGCCGCTGTTTCGGGTCGCGAGTATGTTGAT
GGTTATGGTGGTATTTGGGGCGGCAACTACCCCAAGCCGCGTACGCTTATTATTGGCTATGGCGATTACCTTTGCGATAG
CGCCAGTCCTTCCTCCCGTTCAAAATGCCGATTTATTTTCACTCAGCGCAGTATTTATCACCGCGCAGCAAATTATTATT
GGTGTTGCCATGGGGTTTGTGACTCAAATGGTGATGCAAGTTTTTGTATTAACTGGGCAGATTATTGGTATGCAAACCAG
CCTCGGTTTTGCCTCTATGGTTGATCCAGGTTCAGGTCAGCAAACGCCGGTTATTGGTAACTTTTTTCTATTATTGGCGA
CATTGATCTTCTTAGCCGTAGATGGCCATCTGTTGATGATCCGTATGTTGGTGGCGAGCTTTGAGACCCTACCCATTTCT
AATCAAGGATTAACACTCACTAGCTACCGTGCTTTAGCAGATTGGGGCTCGTATATGTTTGGTGCTGCATTAACTATGTC
GATATCCGCGATTATCGCCTTGTTGTTAGTCAATTTGTCCTTCGGGGTGATGACCCGCGCCGCGCCGCAGTTAAACATTT
TCTCTATTGGTTTTCCGATCACTATGATTGGCGGGCTGTTTATTCTTTGGTTAACCTTAACACCAGTCATGGAGCATTTT
GATGAAGTATGGGCCGCGGCTCAAGTGCTGCTTTGCGATATGTTAGCGCTTCAATGTAACGCAGATGGCTTGATATGA

Upstream 100 bases:

>100_bases
CTTTTCGGTTTGATGTTCATGGGACATTGGTTAGTAGAAACCCTAATGGATTTTTTTGTCGAGATGGTTAATCGCATCCC
GCAAGTAATAGGCTAACCTA

Downstream 100 bases:

>100_bases
CGGTATTAGGAGCAGCCCATGGCTGAAGAATCAAGCGGTGAACGCAGTGAGGAGCCCACTGGGAGGCGTATTGAACAGGC
GCGGGAAAAAGGGCAGATTG

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MELLLDTLMQTIAAYMWPLFRVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPVQNADLFSLSAVFITAQQIII
GVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPIS
NQGLTLTSYRALADWGSYMFGAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHF
DEVWAAAQVLLCDMLALQCNADGLI

Sequences:

>Translated_265_residues
MELLLDTLMQTIAAYMWPLFRVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPVQNADLFSLSAVFITAQQIII
GVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPIS
NQGLTLTSYRALADWGSYMFGAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHF
DEVWAAAQVLLCDMLALQCNADGLI
>Mature_265_residues
MELLLDTLMQTIAAYMWPLFRVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPVQNADLFSLSAVFITAQQIII
GVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQQTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPIS
NQGLTLTSYRALADWGSYMFGAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHF
DEVWAAAQVLLCDMLALQCNADGLI

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

Organism=Escherichia coli, GI1788261, Length=246, Percent_Identity=40.2439024390244, Blast_Score=148, Evalue=3e-37,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 28624; Mature: 28624

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
7.5 %Met     (Translated Protein)
8.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
7.5 %Met     (Mature Protein)
8.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLLDTLMQTIAAYMWPLFRVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
QNADLFSLSAVFITAQQIIIGVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCHHHHCCCCCCC
QTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALADWGSYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
GAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
DEVWAAAQVLLCDMLALQCNADGLI
HHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MELLLDTLMQTIAAYMWPLFRVASMLMVMVVFGAATTPSRVRLLLAMAITFAIAPVLPPV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
QNADLFSLSAVFITAQQIIIGVAMGFVTQMVMQVFVLTGQIIGMQTSLGFASMVDPGSGQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCHHHHCCCCCCC
QTPVIGNFFLLLATLIFLAVDGHLLMIRMLVASFETLPISNQGLTLTSYRALADWGSYMF
CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
GAALTMSISAIIALLLVNLSFGVMTRAAPQLNIFSIGFPITMIGGLFILWLTLTPVMEHF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
DEVWAAAQVLLCDMLALQCNADGLI
HHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8282695; 9097040; 9278503 [H]