| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is yjbH [H]
Identifier: 126175067
GI number: 126175067
Start: 3371287
End: 3373650
Strand: Direct
Name: yjbH [H]
Synonym: Sbal_2863
Alternate gene names: 126175067
Gene position: 3371287-3373650 (Clockwise)
Preceding gene: 126175066
Following gene: 126175073
Centisome position: 65.75
GC content: 43.57
Gene sequence:
>2364_bases ATGAAAAAGTCTAGCCACACAATCCATACCTTAGGCCGATTATCTGCACTGTCTTTGGCATTATTACCATTACTCCAGGT AACTGCAGATGAGTTTTCTTATCCAACACTATTAGCCTCGCAATCAGATTTTGGTGGTGTTGGTTTGATGCAAATGCCAA CAGGCCGAATGGCCCCTGAAGGCGAGTTTAATTTTGCGACTAGCTATAACGACGACTACCAGCACTTCACTGCCTCAGTA CAACTGTTTCCTTGGTTTGAGACCACTGTTCGTTATACGCAGGTACAGGATTTACTCTATAGTAACGATCCTAGCTTTAG CGGGAATTCTAAGCTAACAGATAAAGGTATAGACTTTAAAGTCCGGTTGCTTGAAGAAACTAACTGGCTTCCAGAAACCT CTATCGGTGTTCGCGACTTTGGTGGTACCGGATTATTCGATGGTGAGTTTATTGCGGCGACCAAACGGGTTGGCCCACTA GACTTCACCTTAGGTATTGGCTGGGGCTATATCGGTAATAGCGGTAACCTAACTTCAGATAAAAAGGATCTTAACTATAA CTGCGATCGCGACACTTCCTATGGCGGTAAAGGGGGAACGGTTGATTATCAGCGTTGGTTCAAGGGCTGTGCTGCACTAT TCGGCGGCGTTGAGTACCAAACGCCATGGGAACCATTAAGAGTAAAAATAGAGTATGACGGCAATGACTACCAATCTGAT TACCCTGTCGTGCGTGGCCGCGATAGGAATGCTATGCCACAAGACAGTAAATTCAACTATGGTTTACTATACCGATTTGG TGACTGGGGCGATCTGCATTTAAGTTATGAACGTGGTAATACTTGGACGCTCGGTTTTAGTTTGCAAACGAATTTCAATA CCTTAACTCAGATAAAGCGCGATCCTGCTGCAGCTAAATATAAGCCTATACCAGCGGCACCATTAACGCATGTGCAAACA GCAAATATTCCATTAGATAGTGTTAGCCCTTCAGAAAATATCATTGCGGCGGCTGACACCACTCTACACATCAAAGAAGA AATAGCTGACACTCATTTAATCGTTCAGCCTAAAGAAGCAATGTTAAAAACAACAATTGACTGGAATAAGGTTGCGCAGG ATCTGCAAACGATTTCAGGCTATATCAACGCTAAAATTTACCTCGACTCTGACAGTATTACCGTGGTTGGAGAGCAAACT AAATATCGTGATAGAAATGAAGCACACCAAAGGGCTGCCACTATACTTGCCAATAATAGCGATCTGACTCAAATCAAAGA GTATCGCTTAATTGAGACCCATTATAGCCAGCCGATTACAGAAACGCGTATTGATGCAGAAAAATTTGCCCAAGTAGCCA GCTTTGGTTACCTCAATGCTAAGGTTACTGATGCGAGTCAAGTTGCTGTCCCACGCTTACCCCAAGGTGAGTTAGTAACG CGTACAGATAAAGATTGGCTGGATAAATTAGGCTTCGATGTTGCTCCCACTATGGTGCAATCCTTCGGAGGCTCAGAAGG CTTCTACATGTTTAATATCGGTGTTACTGGGAGTGCAAACTATAAGTTTACCGATAATTTCGAATTTGGCGGTTCTCTTT ATCTCAACTTATACGATAACTACGATAAGTTTTTATATGACGTACCACCGGACGGTACCGACTTGAAACGAGTAAGAACG TTAATACGCCAGTACGTTCATGATAACCCATTGCGGGTTAATAACCTCCAATTGACATGGATGGACAATCTTAGTGATAA CATTTCCTACCAAGCCTATGGTGGTTATTTAGAAATGATGTATGGCGGTGTGGGGACAGAATTTCTCTATCGTCCACTCA ATAGCCAATGGGCATTTGGTTTTGATATTAACTATGCGAAACAGCGAGATCCCGACAGTATGTTCGGTTTCTTTAGTGAC GAAAACCAATTTGACCCTCTAACCAATCGGGCTTATCGAGTGCAAACCGGTGTTGTGACTGGGCATGCAACGGCTTATTA CCAGCCGGAGTGGTTCCCTAATACTTTACTTAGAGTGAGCGCAGGGCAGTATCTTACCGAAGATAAAGGCGTGACGGTTG ACTTCTCTAAACAGTTTGATAGCGGTGTTATTGTCGGTGCATTTGCGACTAAAACCAATTTATCAGCTGAAGAATACGGC GAAGGCAGCTTTACCAAGGGCTTCTATATTTCCATCCCATTCGATCTTATGACCATAAAATCGACTCAAAGTCGTGCTTT CTTGTCTTGGATGCCACTGACCCGTGACGGTGGTCAAATGCTTGGTCGTAAGTACAACTTGTTTGATGTCACAGATGCGC GAGCACCTTGGTATACCAAACCGAGTGTTGAATCAGCGAAATAA
Upstream 100 bases:
>100_bases CTCCTGGAGCAAGTCTCTACGTTGAGTTTTCAAGTCTATTTGATGACTACACTCAACTGAATGAAAACATTGTTGAATTA CTCAGGAATCGGGCTCTGTA
Downstream 100 bases:
>100_bases TGTGTACGAGTTAAAACTAAAAACGGGCAAGATAATTCTTGCCCGTTTTTTCTGCCCATAAAAACTGTTTAAAAAAATCG AGGACTTAATGCCACTGATA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 787; Mature: 787
Protein sequence:
>787_residues MKKSSHTIHTLGRLSALSLALLPLLQVTADEFSYPTLLASQSDFGGVGLMQMPTGRMAPEGEFNFATSYNDDYQHFTASV QLFPWFETTVRYTQVQDLLYSNDPSFSGNSKLTDKGIDFKVRLLEETNWLPETSIGVRDFGGTGLFDGEFIAATKRVGPL DFTLGIGWGYIGNSGNLTSDKKDLNYNCDRDTSYGGKGGTVDYQRWFKGCAALFGGVEYQTPWEPLRVKIEYDGNDYQSD YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKRDPAAAKYKPIPAAPLTHVQT ANIPLDSVSPSENIIAAADTTLHIKEEIADTHLIVQPKEAMLKTTIDWNKVAQDLQTISGYINAKIYLDSDSITVVGEQT KYRDRNEAHQRAATILANNSDLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVAVPRLPQGELVT RTDKDWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDNYDKFLYDVPPDGTDLKRVRT LIRQYVHDNPLRVNNLQLTWMDNLSDNISYQAYGGYLEMMYGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFSD ENQFDPLTNRAYRVQTGVVTGHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSAEEYG EGSFTKGFYISIPFDLMTIKSTQSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTKPSVESAK
Sequences:
>Translated_787_residues MKKSSHTIHTLGRLSALSLALLPLLQVTADEFSYPTLLASQSDFGGVGLMQMPTGRMAPEGEFNFATSYNDDYQHFTASV QLFPWFETTVRYTQVQDLLYSNDPSFSGNSKLTDKGIDFKVRLLEETNWLPETSIGVRDFGGTGLFDGEFIAATKRVGPL DFTLGIGWGYIGNSGNLTSDKKDLNYNCDRDTSYGGKGGTVDYQRWFKGCAALFGGVEYQTPWEPLRVKIEYDGNDYQSD YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKRDPAAAKYKPIPAAPLTHVQT ANIPLDSVSPSENIIAAADTTLHIKEEIADTHLIVQPKEAMLKTTIDWNKVAQDLQTISGYINAKIYLDSDSITVVGEQT KYRDRNEAHQRAATILANNSDLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVAVPRLPQGELVT RTDKDWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDNYDKFLYDVPPDGTDLKRVRT LIRQYVHDNPLRVNNLQLTWMDNLSDNISYQAYGGYLEMMYGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFSD ENQFDPLTNRAYRVQTGVVTGHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSAEEYG EGSFTKGFYISIPFDLMTIKSTQSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTKPSVESAK >Mature_787_residues MKKSSHTIHTLGRLSALSLALLPLLQVTADEFSYPTLLASQSDFGGVGLMQMPTGRMAPEGEFNFATSYNDDYQHFTASV QLFPWFETTVRYTQVQDLLYSNDPSFSGNSKLTDKGIDFKVRLLEETNWLPETSIGVRDFGGTGLFDGEFIAATKRVGPL DFTLGIGWGYIGNSGNLTSDKKDLNYNCDRDTSYGGKGGTVDYQRWFKGCAALFGGVEYQTPWEPLRVKIEYDGNDYQSD YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKRDPAAAKYKPIPAAPLTHVQT ANIPLDSVSPSENIIAAADTTLHIKEEIADTHLIVQPKEAMLKTTIDWNKVAQDLQTISGYINAKIYLDSDSITVVGEQT KYRDRNEAHQRAATILANNSDLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVAVPRLPQGELVT RTDKDWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDNYDKFLYDVPPDGTDLKRVRT LIRQYVHDNPLRVNNLQLTWMDNLSDNISYQAYGGYLEMMYGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFSD ENQFDPLTNRAYRVQTGVVTGHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSAEEYG EGSFTKGFYISIPFDLMTIKSTQSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTKPSVESAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ymcA [H]
Homologues:
Organism=Escherichia coli, GI1790461, Length=770, Percent_Identity=43.8961038961039, Blast_Score=585, Evalue=1e-168, Organism=Escherichia coli, GI1787219, Length=788, Percent_Identity=41.751269035533, Blast_Score=561, Evalue=1e-161,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010344 [H]
Pfam domain/function: PF06082 DUF940 [H]
EC number: NA
Molecular weight: Translated: 88613; Mature: 88613
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKSSHTIHTLGRLSALSLALLPLLQVTADEFSYPTLLASQSDFGGVGLMQMPTGRMAPE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCC GEFNFATSYNDDYQHFTASVQLFPWFETTVRYTQVQDLLYSNDPSFSGNSKLTDKGIDFK CCEEEEECCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE VRLLEETNWLPETSIGVRDFGGTGLFDGEFIAATKRVGPLDFTLGIGWGYIGNSGNLTSD EEEEECCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCEEEEEECCEEEECCCCCCCCC KKDLNYNCDRDTSYGGKGGTVDYQRWFKGCAALFGGVEYQTPWEPLRVKIEYDGNDYQSD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCC YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKR CCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECCCHHHHHHHC DPAAAKYKPIPAAPLTHVQTANIPLDSVSPSENIIAAADTTLHIKEEIADTHLIVQPKEA CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCEEEEHHHHCCCEEEECCHHH MLKTTIDWNKVAQDLQTISGYINAKIYLDSDSITVVGEQTKYRDRNEAHQRAATILANNS HHEECCCHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEECCC DLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVAVPRLPQGELVT CHHHHHHHEEEEHHCCCCCHHHHCCHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCCEEE RTDKDWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDN ECCHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCEEEEEEECC YDKFLYDVPPDGTDLKRVRTLIRQYVHDNPLRVNNLQLTWMDNLSDNISYQAYGGYLEMM CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEECCEEEEE YGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFSDENQFDPLTNRAYRVQTGVVT CCCCCHHHHEECCCCCEEEEEECCCCCCCCCCHHEEEECCCCCCCCCCCCEEEEEEEEEE GHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSAEEYG CCEEEEECCCCCCCCEEEEECCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCCHHHCC EGSFTKGFYISIPFDLMTIKSTQSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTK CCCCCCCEEEEECEEEEEEECCCCCEEEEEECCCCCCHHHHCCEECEEEECCCCCCCCCC PSVESAK CCCCCCC >Mature Secondary Structure MKKSSHTIHTLGRLSALSLALLPLLQVTADEFSYPTLLASQSDFGGVGLMQMPTGRMAPE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCEEEEECCCCCCCCC GEFNFATSYNDDYQHFTASVQLFPWFETTVRYTQVQDLLYSNDPSFSGNSKLTDKGIDFK CCEEEEECCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEE VRLLEETNWLPETSIGVRDFGGTGLFDGEFIAATKRVGPLDFTLGIGWGYIGNSGNLTSD EEEEECCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCEEEEEECCEEEECCCCCCCCC KKDLNYNCDRDTSYGGKGGTVDYQRWFKGCAALFGGVEYQTPWEPLRVKIEYDGNDYQSD CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCC YPVVRGRDRNAMPQDSKFNYGLLYRFGDWGDLHLSYERGNTWTLGFSLQTNFNTLTQIKR CCEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEEECCCHHHHHHHC DPAAAKYKPIPAAPLTHVQTANIPLDSVSPSENIIAAADTTLHIKEEIADTHLIVQPKEA CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEECCCEEEEHHHHCCCEEEECCHHH MLKTTIDWNKVAQDLQTISGYINAKIYLDSDSITVVGEQTKYRDRNEAHQRAATILANNS HHEECCCHHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHEEEEECCC DLTQIKEYRLIETHYSQPITETRIDAEKFAQVASFGYLNAKVTDASQVAVPRLPQGELVT CHHHHHHHEEEEHHCCCCCHHHHCCHHHHHHHHHCCCEEEEECCCHHCCCCCCCCCCEEE RTDKDWLDKLGFDVAPTMVQSFGGSEGFYMFNIGVTGSANYKFTDNFEFGGSLYLNLYDN ECCHHHHHHCCCCHHHHHHHHCCCCCCEEEEEEEEECCCCEEEECCCCCCCEEEEEEECC YDKFLYDVPPDGTDLKRVRTLIRQYVHDNPLRVNNLQLTWMDNLSDNISYQAYGGYLEMM CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCEEEEECCEEEEE YGGVGTEFLYRPLNSQWAFGFDINYAKQRDPDSMFGFFSDENQFDPLTNRAYRVQTGVVT CCCCCHHHHEECCCCCEEEEEECCCCCCCCCCHHEEEECCCCCCCCCCCCEEEEEEEEEE GHATAYYQPEWFPNTLLRVSAGQYLTEDKGVTVDFSKQFDSGVIVGAFATKTNLSAEEYG CCEEEEECCCCCCCCEEEEECCCEEECCCCEEEEECCCCCCCEEEEEEEECCCCCHHHCC EGSFTKGFYISIPFDLMTIKSTQSRAFLSWMPLTRDGGQMLGRKYNLFDVTDARAPWYTK CCCCCCCEEEEECEEEEEEECCCCCEEEEEECCCCCCHHHHCCEECEEEECCCCCCCCCC PSVESAK CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8265357; 9278503 [H]