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The map label for this gene is ydgJ [C]

Identifier: 126175000

GI number: 126175000

Start: 3280987

End: 3282366

Strand: Direct

Name: ydgJ [C]

Synonym: Sbal_2793

Alternate gene names: 126175000

Gene position: 3280987-3282366 (Clockwise)

Preceding gene: 126174998

Following gene: 126175008

Centisome position: 63.99

GC content: 50.65

Gene sequence:

>1380_bases
ATGCATAACATTCATCGTCGTAATTTTCTTAAGGCCGCAGGTGCCGCCACCGCAGGACTCGTTACTGCCAATATTGCTCT
CAATGCCTACGCCAGTAGCGTCGCCCCTAAACCGCAAGCCGGTAAATCCGTTATCGGACTCATAGCGCCTAAGATGGACG
TGGTTCGAGTCGGCTTTATCGGTGTTGGCGAGCGGGGTTTTAGCCATGTCGAGCAATTCTGTCATTTAGAGGGCGTTGAA
CTCAAAGCCATTTGTGATACCCATCAAGCGGTACTCGACAGAGCCGTAGATCATATCGTTAAACAGAATCGGCCCAAACC
GGCTGTCTATACTGGTAATGATCTGAGCTATCGTGATCTGCTGAGCCGTGATGATATCGATATTGTGATTATTTCGACCC
CGTGGGAATGGCACGCGCCTATGGCAATCGAAACCATGGAGAGCGGCAAACATGCCTTTGTTGAGGTGCCAATGGCGCTC
ACGGTTGAGGAGTGCTGGCAAGTTGTCGATACCGCTGAGCGAACTCAGAAAAACTGCATGATGATGGAGAACGTCAACTA
CGGCCGCGAAGAACTGATGGTACTCAACATGGTGCGCCAAGGCGTGTTTGGAGAGTTACTCCACGGCGAAGCCGCTTATA
TCCATGAGCTACGCTGGCAGATGAAGGAGATCGATCATAAGACAGGCTCATGGCGGACTTACTGGCATACCAAACGTAAC
GGTAACTTGTACCCTACACACGGTTTAGGGCCAGTATCCCAGTATATGAACATTAACCGCGGTGACCGATTCGATTATCT
TACCTCGATGAGTTCCCCCGCCCTTGGCCGCGCGCTCTATGCTAAACGTGAATTTCCCGCCGATCATGAGCGTAATCAAC
TCAAGTACATTAATGGGGATATCAATACCAGCCTGATTAAAACCGTTAAGGGCCGAACCATCATGGTCCAGCATGACACG
ACGACCCCAAGACCTTACAGTCGCCACAATTTGATCCAAGGGACAAATGGCGTGTTTGCTGGCTTCCCGAATCGGATCGC
CGTCGAAAATGGTGGCTTTGGTCAAAGTTACCACGAGTGGGATATGGACATGCAAAAGTGGTACGACAAATACGATCACC
CACTGTGGCAACGCATAGGCAAAGAGGCTGAAATTAACGGCGGCCACGGCGGCATGGACTTTGTGATGCTATGGCGCATG
ATTTATTGCCTACGCAATGGCGAGGCTTTAGATCAAGATGTGTACGATGGCGCGTCTTGGTCGGTGGTGAATATCTTAAG
TGAACATTCACTCAATGACCGCAGTAACTCAGTCACCTTCCCTGATTTTACCCGCGGCGCATGGCAAACCGCGAAACCAT
TAGGGATTGTCGGCGCTTAA

Upstream 100 bases:

>100_bases
AAATGGGGTTTCTGATATAACCCATAAGTGAATTACCGTACAAATAAGACCAAGTGATATTTCAATATCCCTACAAAACA
AAAATAAAGCAGGAAGCGCT

Downstream 100 bases:

>100_bases
GCTGCGGCTTTCGCCAAACTCACCACTTTGCCCTGCCCATCAAAAGGATAAGTGCCTCGGCCTTATCCTTTTTCTTTTTC
TTTTTCTTTTTCTTATTCAA

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 459; Mature: 459

Protein sequence:

>459_residues
MHNIHRRNFLKAAGAATAGLVTANIALNAYASSVAPKPQAGKSVIGLIAPKMDVVRVGFIGVGERGFSHVEQFCHLEGVE
LKAICDTHQAVLDRAVDHIVKQNRPKPAVYTGNDLSYRDLLSRDDIDIVIISTPWEWHAPMAIETMESGKHAFVEVPMAL
TVEECWQVVDTAERTQKNCMMMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
GNLYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGDINTSLIKTVKGRTIMVQHDT
TTPRPYSRHNLIQGTNGVFAGFPNRIAVENGGFGQSYHEWDMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRM
IYCLRNGEALDQDVYDGASWSVVNILSEHSLNDRSNSVTFPDFTRGAWQTAKPLGIVGA

Sequences:

>Translated_459_residues
MHNIHRRNFLKAAGAATAGLVTANIALNAYASSVAPKPQAGKSVIGLIAPKMDVVRVGFIGVGERGFSHVEQFCHLEGVE
LKAICDTHQAVLDRAVDHIVKQNRPKPAVYTGNDLSYRDLLSRDDIDIVIISTPWEWHAPMAIETMESGKHAFVEVPMAL
TVEECWQVVDTAERTQKNCMMMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
GNLYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGDINTSLIKTVKGRTIMVQHDT
TTPRPYSRHNLIQGTNGVFAGFPNRIAVENGGFGQSYHEWDMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRM
IYCLRNGEALDQDVYDGASWSVVNILSEHSLNDRSNSVTFPDFTRGAWQTAKPLGIVGA
>Mature_459_residues
MHNIHRRNFLKAAGAATAGLVTANIALNAYASSVAPKPQAGKSVIGLIAPKMDVVRVGFIGVGERGFSHVEQFCHLEGVE
LKAICDTHQAVLDRAVDHIVKQNRPKPAVYTGNDLSYRDLLSRDDIDIVIISTPWEWHAPMAIETMESGKHAFVEVPMAL
TVEECWQVVDTAERTQKNCMMMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
GNLYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGDINTSLIKTVKGRTIMVQHDT
TTPRPYSRHNLIQGTNGVFAGFPNRIAVENGGFGQSYHEWDMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRM
IYCLRNGEALDQDVYDGASWSVVNILSEHSLNDRSNSVTFPDFTRGAWQTAKPLGIVGA

Specific function: Glycosidase [H]

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- InterPro:   IPR019546 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF10518 TAT_signal [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 51894; Mature: 51894

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNIHRRNFLKAAGAATAGLVTANIALNAYASSVAPKPQAGKSVIGLIAPKMDVVRVGFI
CCCCCHHHHHHHHCCCHHCEEEEEEEHHHHHHHCCCCCCCCCCEEEHHCCCCCEEEEEEE
GVGERGFSHVEQFCHLEGVELKAICDTHQAVLDRAVDHIVKQNRPKPAVYTGNDLSYRDL
ECCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHH
LSRDDIDIVIISTPWEWHAPMAIETMESGKHAFVEVPMALTVEECWQVVDTAERTQKNCM
HCCCCCEEEEEECCCCCCCCEEEEHHHCCCEEEEEECCEEEHHHHHHHHHHHHHHHHHEE
MMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
GNLYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGD
CCCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCC
INTSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIAVENGGFGQSYHEW
CCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHH
DMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRMIYCLRNGEALDQDVYDGASW
CCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCHHHCCCCCH
SVVNILSEHSLNDRSNSVTFPDFTRGAWQTAKPLGIVGA
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MHNIHRRNFLKAAGAATAGLVTANIALNAYASSVAPKPQAGKSVIGLIAPKMDVVRVGFI
CCCCCHHHHHHHHCCCHHCEEEEEEEHHHHHHHCCCCCCCCCCEEEHHCCCCCEEEEEEE
GVGERGFSHVEQFCHLEGVELKAICDTHQAVLDRAVDHIVKQNRPKPAVYTGNDLSYRDL
ECCCHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHH
LSRDDIDIVIISTPWEWHAPMAIETMESGKHAFVEVPMALTVEECWQVVDTAERTQKNCM
HCCCCCEEEEEECCCCCCCCEEEEHHHCCCEEEEEECCEEEHHHHHHHHHHHHHHHHHEE
MMENVNYGREELMVLNMVRQGVFGELLHGEAAYIHELRWQMKEIDHKTGSWRTYWHTKRN
EEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
GNLYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLKYINGD
CCCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCC
INTSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIAVENGGFGQSYHEW
CCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHH
DMDMQKWYDKYDHPLWQRIGKEAEINGGHGGMDFVMLWRMIYCLRNGEALDQDVYDGASW
CCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHCHHHCCCCCH
SVVNILSEHSLNDRSNSVTFPDFTRGAWQTAKPLGIVGA
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA