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The map label for this gene is ycdZ [H]

Identifier: 126174935

GI number: 126174935

Start: 3199988

End: 3200392

Strand: Reverse

Name: ycdZ [H]

Synonym: Sbal_2728

Alternate gene names: 126174935

Gene position: 3200392-3199988 (Counterclockwise)

Preceding gene: 126174936

Following gene: 126174934

Centisome position: 62.42

GC content: 48.15

Gene sequence:

>405_bases
ATGGAAAATCGTTGGCAAGTCGCTATTTCTGCCGGCCTATTGGCGGCTATTTGGTGTGGCGTCGCAGATGCCTTTCATCT
GGTCACTTGGATTGGCTTTTTAGGTTGCAGCACTTTTTTCGCTCAACCTAAGGCTGGTTTTCAAGGCGTGATGATGGCGT
GGTGCACGAATCTGTCCGGTGTGTTTTGGGCTTGGCTCATTATCTCGGGTAGCAGCTTTTTTATTTCGCCCGTATTTGGG
TATATTTTTACCGGCATAGCCACTTCGGCCATGTGTTTACAGGCAAGTTATCAAAAGCTTAGCTTTATTCCCGGCGCATT
TATTGGCTGTTGCACTACCTTTGCTATGGCGGGTGATGTGGCCAATGTCGTGCCGTCGTTGATCATTGGTGGCTTATTAG
GTTAG

Upstream 100 bases:

>100_bases
AATGCCGAAAATTAGCAATAGATCAGGTTTTTGTTACCAGAATAGAGGTAATTTAACTAACAGATAAACTTCCGTGAATA
GAATTATAAAGGGGTCATCC

Downstream 100 bases:

>100_bases
CATGAGCCTGTTAACGGGGCAGTTGGTTAGCTTGACACAAAAGTGGTCTGCCGCCACGCGTAGTCAAGTGGCTAGCGCAG
ATTAGTATAATACCTGCTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MENRWQVAISAGLLAAIWCGVADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSGVFWAWLIISGSSFFISPVFG
YIFTGIATSAMCLQASYQKLSFIPGAFIGCCTTFAMAGDVANVVPSLIIGGLLG

Sequences:

>Translated_134_residues
MENRWQVAISAGLLAAIWCGVADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSGVFWAWLIISGSSFFISPVFG
YIFTGIATSAMCLQASYQKLSFIPGAFIGCCTTFAMAGDVANVVPSLIIGGLLG
>Mature_134_residues
MENRWQVAISAGLLAAIWCGVADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSGVFWAWLIISGSSFFISPVFG
YIFTGIATSAMCLQASYQKLSFIPGAFIGCCTTFAMAGDVANVVPSLIIGGLLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yahC [H]

Homologues:

Organism=Escherichia coli, GI87081825, Length=130, Percent_Identity=46.1538461538462, Blast_Score=107, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009476 [H]

Pfam domain/function: PF06496 DUF1097 [H]

EC number: NA

Molecular weight: Translated: 14212; Mature: 14212

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
8.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENRWQVAISAGLLAAIWCGVADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH
VFWAWLIISGSSFFISPVFGYIFTGIATSAMCLQASYQKLSFIPGAFIGCCTTFAMAGDV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ANVVPSLIIGGLLG
HHHHHHHHHHHCCC
>Mature Secondary Structure
MENRWQVAISAGLLAAIWCGVADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH
VFWAWLIISGSSFFISPVFGYIFTGIATSAMCLQASYQKLSFIPGAFIGCCTTFAMAGDV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ANVVPSLIIGGLLG
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609; 9457880 [H]