| Definition | Shewanella baltica OS155 chromosome, complete genome. |
|---|---|
| Accession | NC_009052 |
| Length | 5,127,376 |
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The map label for this gene is ybbP [H]
Identifier: 126174894
GI number: 126174894
Start: 3148219
End: 3150747
Strand: Reverse
Name: ybbP [H]
Synonym: Sbal_2686
Alternate gene names: 126174894
Gene position: 3150747-3148219 (Counterclockwise)
Preceding gene: 126174895
Following gene: 126174893
Centisome position: 61.45
GC content: 50.57
Gene sequence:
>2529_bases ATGGAGTTAAGTCTGGCATGGCGCCTGTTTAAGCGCGAGTTACAGCAAGGGCAATTGTTATTGATTATCCTCGCTATTAC GCTCGCGGTACTATCTGTGAGTGGGTTGGCACGGGTGAGTGAACGGCTGCAAGTGGCGATCACTGGCCAAGCTTCACAGT TTATTGCCGCCGATCGGATTATCGATTCGCCGGTTAAAATTGATGCGGCGATTTTAACCAAAGCCGAAGATCTTGGGCTT AAGCATGTGACGAACATGCAATTTAATTCCATGGTCTATTCGGGTGATAAGTTTCAGTTAGTCACAGTTCGTGCTGTAGA GACGGGTTATCCACTTAAGGGCGACATTGAACTCACCAGCGGTAAAACCAAGGCTTTACCCCAAGCGGGCGAAATCTGGT TTGAAACTCGCTTAGGTGGACTCCTCGGTTATCCCAAATCCATCGAACTAGGTAACAGCGAATTTGTGCTCAGCAATGAG ATCAGTCGCTTACCCGACGCGGGCTTTAATCCTTTTGCTTCATCGCCCGTGGTATTGATGCGCATGGAAGATGTCGCCAA AACGGGAGTGATTCAACCGGGCAGCCGCGTGACCTATCTGTATCAATTTGCTGGTGATGAAGCCTCGCTTACGGCCTTTG AGCAAAGTGTTAAACCGCTTCTCAATAGCACCCAGCGCTGGGTCGATGTGCAATCCGGTGATTCGCCGATTGCGGGAGCC GTTAAGCGAGCTGAGCGCTTCCTACTGCTAGCTAGTTTGATGGGCATTGCACTGGCCTGCGCCGCGATAGGCATTGCCGC CCAGCGTTATTGTCAGCGCCATTACGATGTGGTGGCCATGCTGAAAACCTTTGGCGCCTCGGCAAAGCAAATTCGGTTGT TGTTTGGCACTCACTTATTGTTAGTGACGTTAATGGGGATTGTGCTTGGCCTTATCGGTGGTGTGTTACTCGATTTTGGG ATTAGTTATCTATTGCCGCCCGAAATTGCCGCCTATTCGCCGCCACTCACTCGGCCATTACTGCTTGGTGTAAGCACTGG GCTTATCAGCGCCTTTATGTTTTCGGCTTATCCATTGATGCGCTTACTGGCTATTCCGCCACTACGAGTGCTACAGCGTC AGTTAGAGGGCCTGCAACTTGGGATGTGGCTGCATCTGCTTTTGAGCTTAGGGGCGATGGCGTTACTGGGCTATTTGTAT TCCCAAAGTTGGGCTTTGACCCTGACTGTGGTCGCGGCCGTGTTGCTGCTCGGTGTGCTGTTAAGCGTGCTTGGCTTTGT GATGATACGTTTAGGCCACAGTGTTGGTATGAAAACCACCAATCCATTACAGTTGGCACTGGCAGGGCTCAGACGTCGTG CGCGGCAAAATGCGGTGCAATTGGTGGGATTTAGCGCTGCACTGGTATTGTTATTGATGATTCTGGCGTTAAGACAAGAC TTGCTCAACGAGTGGCAAAAACAGTTGCCCGAAAATGCGCCTAACTACTTCCTCGTTAATATTGCGCCTGATGATGCAAA GCCCTTAAATGATTTCATGACGACTAAGGGGATAGTGGCGACGGACATTTATCCTGTGATCCGTGGCCGTTTAACTCAAA TTAACGGCGAAGTGCTGATTTCGAATGAACAGTCTGATGCGGGTGAAAAGGGCAGAGTGGGTATTTCCCGCGAGTTAAAC CTAACGTGGCGTAATACGCTACCGGCCAATAACGAACTGTTAGAGGGGCATTTTAATCAAGCGGCCGATGATGTGTCGGT GGAATCTGGCGTGGCGGACCGTTTAGGTATTGGCATTGGCGATAAGTTGACTTATGTGATTGATAATCAAGAGCTCACAG TTAAGGTTGCCAGTATTCGTGCCGTGCACTGGGAAACGCTGCAGCCGAACTTCTTTATGATTTTCACCCAAGAAGCTCTC GCGCCCTTTGCTTATACCTCGATGGCGAGTTTTTATCTGAATGATCAGCAAGCTACGAATGACCAGTCAACAAATGACCA GTCAACAAACGGCCAAGCGCTGAGTGCCGATGGTACGCCTAAGGATGCGGTGATCCTTGCGCTTATTCAGCAATTCCCGA CCATATCGATCATCGATGTGGGCGCTATGGTGGGGCAGTTACGGCAGATCATAGAGCAAGTGTCGCTGTCGCTGACCTTA GTGCTGGCCTTAGTGTTACTGGCCAGTGCCTTAGTATTGATTGCACAGACTGAAGCGGGCATGGCAACTCGGCAGCGCGA ACTGGCGGTGCTGCGTACCTTTGGCGCTTCGGGATGGTTATTGCGCAGTGCAACGGGTTTAGAGTTCGCCTTGCTTGGCG GTATTGCGGGCGTGTTAGCAGTCATAGTGGCCGAATTTGCGTTATATCTACTTAAGACGCAAGTGTTTGAGCTTAATGTG TATATGCACTGGCCTTGGTGGGGAATTGCCCCTGTTTCTGGCGCTTTAATCGTGGCCTTACTTGGGGTGTGGCGTTGCCG ACAATTGCTTAGCCAATCTTGCTCTGAGCTATTAAAGGCGGGCAGCTAG
Upstream 100 bases:
>100_bases TGGCAAAGCGTTGTGAGCGGCAGCTAGTGATGGATAACGGCCATTTACAGGAAGATACGGCGCACACAGCACCGCTCGCC GATGCTAAGGAGGCTTAATA
Downstream 100 bases:
>100_bases TGGTTGCTTGCATGGGCTAACACTTGAGTTTATGACGTAAATAGACAGCGTTAACAATTAAAAGCACTGATGCCGCCTAA GCTCAGTGCTTTTTTTGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 842; Mature: 842
Protein sequence:
>842_residues MELSLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAITGQASQFIAADRIIDSPVKIDAAILTKAEDLGL KHVTNMQFNSMVYSGDKFQLVTVRAVETGYPLKGDIELTSGKTKALPQAGEIWFETRLGGLLGYPKSIELGNSEFVLSNE ISRLPDAGFNPFASSPVVLMRMEDVAKTGVIQPGSRVTYLYQFAGDEASLTAFEQSVKPLLNSTQRWVDVQSGDSPIAGA VKRAERFLLLASLMGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASAKQIRLLFGTHLLLVTLMGIVLGLIGGVLLDFG ISYLLPPEIAAYSPPLTRPLLLGVSTGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLY SQSWALTLTVVAAVLLLGVLLSVLGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLMILALRQD LLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMTTKGIVATDIYPVIRGRLTQINGEVLISNEQSDAGEKGRVGISRELN LTWRNTLPANNELLEGHFNQAADDVSVESGVADRLGIGIGDKLTYVIDNQELTVKVASIRAVHWETLQPNFFMIFTQEAL APFAYTSMASFYLNDQQATNDQSTNDQSTNGQALSADGTPKDAVILALIQQFPTISIIDVGAMVGQLRQIIEQVSLSLTL VLALVLLASALVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALYLLKTQVFELNV YMHWPWWGIAPVSGALIVALLGVWRCRQLLSQSCSELLKAGS
Sequences:
>Translated_842_residues MELSLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAITGQASQFIAADRIIDSPVKIDAAILTKAEDLGL KHVTNMQFNSMVYSGDKFQLVTVRAVETGYPLKGDIELTSGKTKALPQAGEIWFETRLGGLLGYPKSIELGNSEFVLSNE ISRLPDAGFNPFASSPVVLMRMEDVAKTGVIQPGSRVTYLYQFAGDEASLTAFEQSVKPLLNSTQRWVDVQSGDSPIAGA VKRAERFLLLASLMGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASAKQIRLLFGTHLLLVTLMGIVLGLIGGVLLDFG ISYLLPPEIAAYSPPLTRPLLLGVSTGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLY SQSWALTLTVVAAVLLLGVLLSVLGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLMILALRQD LLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMTTKGIVATDIYPVIRGRLTQINGEVLISNEQSDAGEKGRVGISRELN LTWRNTLPANNELLEGHFNQAADDVSVESGVADRLGIGIGDKLTYVIDNQELTVKVASIRAVHWETLQPNFFMIFTQEAL APFAYTSMASFYLNDQQATNDQSTNDQSTNGQALSADGTPKDAVILALIQQFPTISIIDVGAMVGQLRQIIEQVSLSLTL VLALVLLASALVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALYLLKTQVFELNV YMHWPWWGIAPVSGALIVALLGVWRCRQLLSQSCSELLKAGS >Mature_842_residues MELSLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAITGQASQFIAADRIIDSPVKIDAAILTKAEDLGL KHVTNMQFNSMVYSGDKFQLVTVRAVETGYPLKGDIELTSGKTKALPQAGEIWFETRLGGLLGYPKSIELGNSEFVLSNE ISRLPDAGFNPFASSPVVLMRMEDVAKTGVIQPGSRVTYLYQFAGDEASLTAFEQSVKPLLNSTQRWVDVQSGDSPIAGA VKRAERFLLLASLMGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASAKQIRLLFGTHLLLVTLMGIVLGLIGGVLLDFG ISYLLPPEIAAYSPPLTRPLLLGVSTGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLY SQSWALTLTVVAAVLLLGVLLSVLGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLMILALRQD LLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMTTKGIVATDIYPVIRGRLTQINGEVLISNEQSDAGEKGRVGISRELN LTWRNTLPANNELLEGHFNQAADDVSVESGVADRLGIGIGDKLTYVIDNQELTVKVASIRAVHWETLQPNFFMIFTQEAL APFAYTSMASFYLNDQQATNDQSTNDQSTNGQALSADGTPKDAVILALIQQFPTISIIDVGAMVGQLRQIIEQVSLSLTL VLALVLLASALVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALYLLKTQVFELNV YMHWPWWGIAPVSGALIVALLGVWRCRQLLSQSCSELLKAGS
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=821, Percent_Identity=36.6626065773447, Blast_Score=470, Evalue=1e-133,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 91394; Mature: 91394
Theoretical pI: Translated: 6.96; Mature: 6.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELSLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAITGQASQFIAADRI CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHH IDSPVKIDAAILTKAEDLGLKHVTNMQFNSMVYSGDKFQLVTVRAVETGYPLKGDIELTS HCCCCEEHHHHHHHHHHCCCHHHCCCCCCCEEECCCCEEEEEEEEECCCCCCCCCEEECC GKTKALPQAGEIWFETRLGGLLGYPKSIELGNSEFVLSNEISRLPDAGFNPFASSPVVLM CCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCEEECCHHHHCCCCCCCCCCCCCEEEE RMEDVAKTGVIQPGSRVTYLYQFAGDEASLTAFEQSVKPLLNSTQRWVDVQSGDSPIAGA EEHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHH VKRAERFLLLASLMGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASAKQIRLLFGTHLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LVTLMGIVLGLIGGVLLDFGISYLLPPEIAAYSPPLTRPLLLGVSTGLISAFMFSAYPLM HHHHHHHHHHHHHHHHHHCCHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLYSQSWALTLTVVAAVLLLGVL HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LSVLGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLMILALRQD HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMTTKGIVATDIYPVIRGRLTQINGEVLI HHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCHHEEECCEEEE SNEQSDAGEKGRVGISRELNLTWRNTLPANNELLEGHFNQAADDVSVESGVADRLGIGIG ECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHCHHHHCCCCCCHHCCCHHHHCCCCC DKLTYVIDNQELTVKVASIRAVHWETLQPNFFMIFTQEALAPFAYTSMASFYLNDQQATN CCEEEEECCCEEEEEEEEEEEEEEEECCCCEEEEEEHHHHCHHHHHHHHHHHCCCCCCCC DQSTNDQSTNGQALSADGTPKDAVILALIQQFPTISIIDVGAMVGQLRQIIEQVSLSLTL CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHH VLALVLLASALVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLA HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHH VIVAEFALYLLKTQVFELNVYMHWPWWGIAPVSGALIVALLGVWRCRQLLSQSCSELLKA HHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GS CC >Mature Secondary Structure MELSLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAITGQASQFIAADRI CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCHHHHHHHHH IDSPVKIDAAILTKAEDLGLKHVTNMQFNSMVYSGDKFQLVTVRAVETGYPLKGDIELTS HCCCCEEHHHHHHHHHHCCCHHHCCCCCCCEEECCCCEEEEEEEEECCCCCCCCCEEECC GKTKALPQAGEIWFETRLGGLLGYPKSIELGNSEFVLSNEISRLPDAGFNPFASSPVVLM CCCCCCCCCCHHHHHHHHHHHHCCCCCEECCCCCEEECCHHHHCCCCCCCCCCCCCEEEE RMEDVAKTGVIQPGSRVTYLYQFAGDEASLTAFEQSVKPLLNSTQRWVDVQSGDSPIAGA EEHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHEEEECCCCCCHHHH VKRAERFLLLASLMGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASAKQIRLLFGTHLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LVTLMGIVLGLIGGVLLDFGISYLLPPEIAAYSPPLTRPLLLGVSTGLISAFMFSAYPLM HHHHHHHHHHHHHHHHHHCCHHHCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH RLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLYSQSWALTLTVVAAVLLLGVL HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH LSVLGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLMILALRQD HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMTTKGIVATDIYPVIRGRLTQINGEVLI HHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHCCCCHHHHHHHHHHCHHEEECCEEEE SNEQSDAGEKGRVGISRELNLTWRNTLPANNELLEGHFNQAADDVSVESGVADRLGIGIG ECCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHCHHHHCCCCCCHHCCCHHHHCCCCC DKLTYVIDNQELTVKVASIRAVHWETLQPNFFMIFTQEALAPFAYTSMASFYLNDQQATN CCEEEEECCCEEEEEEEEEEEEEEEECCCCEEEEEEHHHHCHHHHHHHHHHHCCCCCCCC DQSTNDQSTNGQALSADGTPKDAVILALIQQFPTISIIDVGAMVGQLRQIIEQVSLSLTL CCCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHH VLALVLLASALVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLA HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHH VIVAEFALYLLKTQVFELNVYMHWPWWGIAPVSGALIVALLGVWRCRQLLSQSCSELLKA HHHHHHHHHHHHHHEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GS CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]