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The map label for this gene is hlyB [H]

Identifier: 126174776

GI number: 126174776

Start: 3003057

End: 3005054

Strand: Reverse

Name: hlyB [H]

Synonym: Sbal_2563

Alternate gene names: 126174776

Gene position: 3005054-3003057 (Counterclockwise)

Preceding gene: 126174779

Following gene: 126174775

Centisome position: 58.61

GC content: 48.25

Gene sequence:

>1998_bases
ATGTTGTTACCAACACGTATTTCGCAGCGGCTCACTATGGGCAGCATAGTGCTGCTTTTACTGACCGGACTCGCTGTTTT
TGGTGTGATGTCACTTAGGGGGCAACCTCGAGTGGTGGCGGCGAGTCAAGAGTTAATCGAGCAAACCGGTAGCAGTATCG
TGAGGCAACTCGCGCTCAAGCTTGCAAGCATTGAGGGCATTACCTTAAGCCTTGCACACCTCGCAGAAGTGTTACCCCAC
GAGCAAGCTCTTTACCTTAATTCCTTACCCAATCTAATTGATAACAATGGCGATCTCACTATCGCTGGCGGCGGGATCTG
GCCTGAGCCGGATAAATTTGTCGCTGGAAGCACCCGCCATAGTTTTTTCTGGGCCCGTGGTAGCGATAATTTACTGGCTT
ATTCAGATGACTATAATGCGCAATCTGGCCCTGGGTATCACAATGATCCTTGGTATACAGGGGCACGCACGAGTTCTGTA
TCCCAATGTTTATGGTCTGAAGCTTATCAGGATACCGTTACGAAAGTGGCTATGGTGACATGCAGTGTGCCATATCGTCT
CACGGGGACATTTGCTGGGGTCGCAACAATAGATTTAAAACTTGATGATTTAGCAAAATTTCTAACAGAACATGGCAATG
TGACTGACGGCTATGCTTTCGCTTTAGATCAAGCGGGTAATATCTTGCATTTTCCTGAAGCGAATAAGTCCGACACTATG
CTGCGCTTCACGGATCTCGTCGGGCAGTTACCTTGGCTTGCTCCCGTTGAAGCTGCACTTAAACAAACCTCAATTAATAA
CGTTATTTCAGTGAGTTTAGATAAGGATGGAAGACTCAATCAGGCGAGCGAGGTAAGCCTTTTTGTGATGCCTGATACCG
GATGGGTGATTGGTCTTGTGACGCCAAAGACCCGAGTCACAGGGCTTGCCCGTGAGCTGACCTTTGATATTTTATTGTTT
TTATTGCCCTTGCTCGCCATTTTACTTTATTTGGCTTGGTTGTCGGGTAAAAAACTGTTGGCGCAACTTGAGGAAACCAC
AGATCAAATTGCTTCCCTTGGGAGCGGTAATTTGGGTGCCAATGTCGAGCTGCAAATTCAGCGGGATGATGAAATTGGCG
CTTTGCGTCGAGCAGTAAATACCTATGCGGGTACACTGAGGGCAATGTTAGATTTGATCACCCAAGAGGCGAAGAAAGTT
CAGTTTGAGGCAACGCAATTAAGTGGTCTTAGCCATAGGTTAGCCCAACGTGCTGAACAACAGCGGCTCGAGAGTGCGCA
GTTAGCTGCGGCGATAACACAAATGTCTTCAAGCGCGATGGAAGTGGCAAATAACACTAATGATTGTGCTGCAACAGCGC
AATCTTCTTTAATTGTGGTGCGAGAAGGGCAAACCCGAGTGGCATCCAGCAATGCTTCCATTGAGGCATTAGCGGGGGAA
ATCGCCAATGCAACCAAGGTGATATCCCAGTTGGCTCAAGATAGTCAGAAAGTGGGCGCCGTATTGGATGTGATCAAGGC
GATTTCTGAGCAAACTAATCTGTTAGCGTTAAATGCGGCAATAGAAGCAGCAAGGGCGGGGGATCAGGGTCGTGGCTTTG
CGGTTGTTGCCGATGAAGTACGAACTCTTGCGGGGCGAACTCAAGATTCCGCCAATGAAATCAGTACCATGATTAACGCT
TTGCAATCGGCTTCGCGGCTGGCGGTACAAGCGATGCAAACAGGTGAGTCCCGCACTGTCCACGCAGTTGCTGAGGCTGA
GGGAGCAGCCAGTTCTTTATCGAGTACTGTACAAAGTTTCGATGATATTTCGCAGCGAGCTCAGCAAATTGCTTTAGCCG
CTCAGCAACAAAGCCAAGTGACTCAGGAGATCAATGAGTTGGCGGTGCGGATTAATAGTATCAGTGAAGATAACTCACTC
GATGCGACCGCGCTCGATGCGTTAAGCCTTGAGATGCAAAAATTATCCGACCGTTTAATCAACATCAATCGAGCTTAA

Upstream 100 bases:

>100_bases
ATTTGCACTAGGATGGTGCGACGTATGATTCTCGATTGTCTTGGATCATACGGCCGAGCAATTCTCCCATCTGGGTGACT
TATTTTAAGTAGAGAAAGCT

Downstream 100 bases:

>100_bases
TCCTAATATGCTTATTAATAGTGGGTTGTGGGCCTCCTTGAAGTGGCGCTTCAACCGACAAGGGACTCAAAGATAAGTTA
AAGAACGCGATATTTTTAAG

Product: methyl-accepting chemotaxis sensory transducer

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 665; Mature: 665

Protein sequence:

>665_residues
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALKLASIEGITLSLAHLAEVLPH
EQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSTRHSFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSV
SQCLWSEAYQDTVTKVAMVTCSVPYRLTGTFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
LRFTDLVGQLPWLAPVEAALKQTSINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLVTPKTRVTGLARELTFDILLF
LLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGANVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKV
QFEATQLSGLSHRLAQRAEQQRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRTLAGRTQDSANEISTMINA
LQSASRLAVQAMQTGESRTVHAVAEAEGAASSLSSTVQSFDDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSL
DATALDALSLEMQKLSDRLININRA

Sequences:

>Translated_665_residues
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALKLASIEGITLSLAHLAEVLPH
EQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSTRHSFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSV
SQCLWSEAYQDTVTKVAMVTCSVPYRLTGTFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
LRFTDLVGQLPWLAPVEAALKQTSINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLVTPKTRVTGLARELTFDILLF
LLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGANVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKV
QFEATQLSGLSHRLAQRAEQQRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRTLAGRTQDSANEISTMINA
LQSASRLAVQAMQTGESRTVHAVAEAEGAASSLSSTVQSFDDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSL
DATALDALSLEMQKLSDRLININRA
>Mature_665_residues
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALKLASIEGITLSLAHLAEVLPH
EQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSTRHSFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSV
SQCLWSEAYQDTVTKVAMVTCSVPYRLTGTFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
LRFTDLVGQLPWLAPVEAALKQTSINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLVTPKTRVTGLARELTFDILLF
LLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGANVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKV
QFEATQLSGLSHRLAQRAEQQRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRTLAGRTQDSANEISTMINA
LQSASRLAVQAMQTGESRTVHAVAEAEGAASSLSSTVQSFDDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSL
DATALDALSLEMQKLSDRLININRA

Specific function: May form a pore through which the hemolysin can be exported [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

Organism=Escherichia coli, GI1787690, Length=362, Percent_Identity=29.5580110497238, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788194, Length=323, Percent_Identity=29.4117647058824, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI1789453, Length=328, Percent_Identity=29.5731707317073, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1788195, Length=296, Percent_Identity=32.0945945945946, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI2367378, Length=313, Percent_Identity=28.4345047923323, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004090
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR000727 [H]

Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]

EC number: NA

Molecular weight: Translated: 71244; Mature: 71244

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
LASIEGITLSLAHLAEVLPHEQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSTRH
HHHCCCCEEEHHHHHHHCCCHHHHHHHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCC
SFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSVSQCLWSEAYQDTVTKVAMVT
CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
CSVPYRLTGTFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
ECCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCCCHH
LRFTDLVGQLPWLAPVEAALKQTSINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLV
HHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEE
TPKTRVTGLARELTFDILLFLLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
NVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKVQFEATQLSGLSHRLAQRAEQ
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCEEECCCCCHHHHHHH
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCEEEEHHHH
RTLAGRTQDSANEISTMINALQSASRLAVQAMQTGESRTVHAVAEAEGAASSLSSTVQSF
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHH
DDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSLDATALDALSLEMQKLSDRLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NINRA
CCCCC
>Mature Secondary Structure
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHH
LASIEGITLSLAHLAEVLPHEQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSTRH
HHHCCCCEEEHHHHHHHCCCHHHHHHHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCCCC
SFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSVSQCLWSEAYQDTVTKVAMVT
CEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHE
CSVPYRLTGTFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTM
ECCCEEEEECCCCEEEEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCCCHH
LRFTDLVGQLPWLAPVEAALKQTSINNVISVSLDKDGRLNQASEVSLFVMPDTGWVIGLV
HHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEE
TPKTRVTGLARELTFDILLFLLPLLAILLYLAWLSGKKLLAQLEETTDQIASLGSGNLGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
NVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKVQFEATQLSGLSHRLAQRAEQ
CEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEEEEECCCCEEECCCCCHHHHHHH
IANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCEEEEHHHH
RTLAGRTQDSANEISTMINALQSASRLAVQAMQTGESRTVHAVAEAEGAASSLSSTVQSF
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCHHHHHHHHHHHH
DDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSLDATALDALSLEMQKLSDRLI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
NINRA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2162464; 10952301 [H]