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The map label for this gene is yeaM [H]

Identifier: 126174563

GI number: 126174563

Start: 2736135

End: 2736986

Strand: Reverse

Name: yeaM [H]

Synonym: Sbal_2350

Alternate gene names: 126174563

Gene position: 2736986-2736135 (Counterclockwise)

Preceding gene: 126174567

Following gene: 126174548

Centisome position: 53.38

GC content: 50.23

Gene sequence:

>852_bases
ATGTCAAAACATGTTCCTAAAGCGACATTGTTAACGCCCAGTGACGTGGCGTTTATCACAGATGCCAATCGACCTGTGCT
GACCCATACTCGCAATATGGCGGCGGAAGCGGGCATTGAGCCTCATTCACATCCGCGGGGGCAGCTACTTTGGGCCGCCA
AAGGCTTGTTACGTGTCCGCAGTGAAAATGCCGTCTGGGTGGTACCTTCAACCCATGCGGTTTGGATCCCCTGCAATTTG
CCCCATCAAGTGAACAGCGAAACCCACGCCCACACTCGCAATATTTATATTGATCCTAGCTATGATGTTAGGTCACTGGA
TACGCAAGTGGTGATGGTGACGATGACAGCGCTGATGCGCGAACTGGTGCTCAAACTCTGTGAGAGTTCACATCTTATGA
ACAGTGGACAACTGCATCGGTTAGGTTTGGTTGCCATTGATGAGCTTGAAACTCTGGACAGCCTAGATGCCCATTTACCC
GCAGGCTCAGATCCAAGGCTCAGCCGCTTGATTCAAAAGTTGATCCGGCACCCAACAGTGAATTACACCTTGACCGAGTT
AGCCGAAATGGGCGGCGCGAGTGTGAGAACGATTGAGCGACTATTCAAAGCTGAAACTGGGCTCACTTATCGACAATGGC
GGCAAAGGTTTCGTTTGTTAAATTCGCTTGAAAGCTTAAGCCAAGGAGAGAGCACGACTAGGGTGGCGCATAGTCTAGGT
TATCTGAGCGTCAGCAGTTTCAGTGCAGCTTTTAAAATGCAATTTGGTTGCACGCCGCAAGACTATCCGCAGCATAAGCC
GATGAAAAGCAAGGTGAATTGGTTTCCTGACCCCGTGACGGGTAACAACTAA

Upstream 100 bases:

>100_bases
ACGCCAATAAAACGTTTCATGTTTACCGACCTATTGGGTTGAATACGTAAAAGATGCCAACTAAGATAACTGACTTGGTC
TGGCGTTTTAAGAGGGTAAT

Downstream 100 bases:

>100_bases
AACAATGTATGCTCGATTGTTGCCTTTGCATTCAAGGCATTACGAATGCCGAGTTCCTATTTTTATAAAGTGATGTTAAA
GCTAACGATTTTGAATGGCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MSKHVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVRSENAVWVVPSTHAVWIPCNL
PHQVNSETHAHTRNIYIDPSYDVRSLDTQVVMVTMTALMRELVLKLCESSHLMNSGQLHRLGLVAIDELETLDSLDAHLP
AGSDPRLSRLIQKLIRHPTVNYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLG
YLSVSSFSAAFKMQFGCTPQDYPQHKPMKSKVNWFPDPVTGNN

Sequences:

>Translated_283_residues
MSKHVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVRSENAVWVVPSTHAVWIPCNL
PHQVNSETHAHTRNIYIDPSYDVRSLDTQVVMVTMTALMRELVLKLCESSHLMNSGQLHRLGLVAIDELETLDSLDAHLP
AGSDPRLSRLIQKLIRHPTVNYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLG
YLSVSSFSAAFKMQFGCTPQDYPQHKPMKSKVNWFPDPVTGNN
>Mature_282_residues
SKHVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVRSENAVWVVPSTHAVWIPCNLP
HQVNSETHAHTRNIYIDPSYDVRSLDTQVVMVTMTALMRELVLKLCESSHLMNSGQLHRLGLVAIDELETLDSLDAHLPA
GSDPRLSRLIQKLIRHPTVNYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLGY
LSVSSFSAAFKMQFGCTPQDYPQHKPMKSKVNWFPDPVTGNN

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=238, Percent_Identity=33.1932773109244, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 31705; Mature: 31573

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKHVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVR
CCCCCCCEEEECCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEE
SENAVWVVPSTHAVWIPCNLPHQVNSETHAHTRNIYIDPSYDVRSLDTQVVMVTMTALMR
CCCEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHCHHHHHHHHHHHHH
ELVLKLCESSHLMNSGQLHRLGLVAIDELETLDSLDAHLPAGSDPRLSRLIQKLIRHPTV
HHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
NYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLG
CHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
YLSVSSFSAAFKMQFGCTPQDYPQHKPMKSKVNWFPDPVTGNN
CHHHHHHCEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SKHVPKATLLTPSDVAFITDANRPVLTHTRNMAAEAGIEPHSHPRGQLLWAAKGLLRVR
CCCCCCEEEECCCCEEEEECCCCCEEHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHEEE
SENAVWVVPSTHAVWIPCNLPHQVNSETHAHTRNIYIDPSYDVRSLDTQVVMVTMTALMR
CCCEEEEEECCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHCHHHHHHHHHHHHH
ELVLKLCESSHLMNSGQLHRLGLVAIDELETLDSLDAHLPAGSDPRLSRLIQKLIRHPTV
HHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC
NYTLTELAEMGGASVRTIERLFKAETGLTYRQWRQRFRLLNSLESLSQGESTTRVAHSLG
CHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
YLSVSSFSAAFKMQFGCTPQDYPQHKPMKSKVNWFPDPVTGNN
CHHHHHHCEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]