Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 126174500

GI number: 126174500

Start: 2651218

End: 2653467

Strand: Reverse

Name: yciR [C]

Synonym: Sbal_2284

Alternate gene names: 126174500

Gene position: 2653467-2651218 (Counterclockwise)

Preceding gene: 126174501

Following gene: 126174497

Centisome position: 51.75

GC content: 45.6

Gene sequence:

>2250_bases
ATGGCGTACGGCGTTAATCTTCCAGATCTGCTCGACCATACTGACGTTAAACTCGCCCACAATGTCAGCATAGCTTGCTA
TAGCAGTGTTCTCTCTATGCTGCTTAATGGCGCACCGCTACATGAAATCTTGCATGCCTTAGTGCTAAAAATCGAAACGC
AAAAGATAGGCACTCGTGGATCTATATTACTGCTCAGCGGTGATGGCAAACGTTTGTTGTTAGGTGCTGCGCCCCATTTA
CCCGACAGTTACAACCAAGCGATTAATGGGGTCGAGATTGGCCCCAATGTTGGCTCCTGCGGAACAGCGGCTTATTTCGC
AAAGCGGGTTATCGTTGAAGACATCGCTACACATCCCTATTGGGAAAATTATAAAGAACTGCCACTGCGTGCCGGTCTTA
AATCTTGTTGGTCTGAACCTATCAAAGATACTCAAGGCAAAGTGCTCGGCACATTTGCCATGTACTACGATACGATAAAG
TCCCCAACAGAGCTTGATTTAGAGCTGATTTCAGAGGCGGCGAGATTAGCCAGTTTAGCCATTGAACGCAGTCGGGCAAT
GGAGTTTCAGCGTTTAGCAGTGAAAATTTTTGACCGCTTACCTTTGGCACTGGTTATCTCCAATTCCGATGATTCCGTTC
TCTATGCTAACCCCGCTTTTAAACACATCGTTCTTCCACAAGATATTGATATCGCAAACTTTAACCCAAAGATGTTTTTA
TCTGCGTCTCAACCCAATGAGTTAGTTGGCCTATTTGAGCATTTAGCGCAGGATAAAATGTGGCAGGGGGAATTGGTTGG
CTTAAGGGGCAATGGCGAGGAGTTTTATCTAGACCTTATCGTCACCACATTTCGAGAGCCCAATGGATTACAGCCGTGTT
TTGCGTGGCTATTTTCAGATATTAGTGAGCGTAAAAAAGCGGCGCAGCTGATTAAGTATCAGGCCAATAATGACTCGCTG
ACTGGGCTTGCTAACCGTAATGCCTTGTTTAAACTGATCCAATCTTTAATTACCTCTGACAGTCTGACGCCCGGCTTTAG
TTTTATGCTGATGGATTTAGATAACTTTAAACAAGTTAACGACACCCATGGCCACGACAAAGGTGATGCGTTATTAGTGC
AAGTGGTGCGGCAGATTTGCGAGTGCCTCAATGACACTATGGTGTTTGCGCGCCTCGGCGGTGATGAGTTTGCCTTACTG
TTACCTGGGATAGTCAACCAGAAAGAGTTGGCACAACTCGCTGAAACAATTAATAAGCATGTTGCTAAACGTTATGTGCT
TGCCGATGGTAAAGGCGTTTATAGTTCGGTAAGTATAGGGATTGCGCGTTTTCCTGAAGATGCCCTCGATCTCGAGCAGC
TGTTAAATTGCGCCGATCAGGCCATGTATATTTCAAAGGCTAACGGTCGTAATCGTTATCATTTTTTTACTGAGCAAATG
CAGCTTAATGCCGAGCGTATCGCTAGCCTTCATAATCAACTCAAGCAGGCACTCGATCAACAGACTTTTGAGCTTTATTA
CCAGCCCATAGTTAATGCGACCACAGGTTTGATTGTTCGCGCCGAAGTGCTGCTGCGCTGGCAGCATGATGGGCAATTCA
TTCCGCCCGATGAGTTTATTCCCATCGCGGAGAACAGCGGCTTAATTGTTGATATTGGTCGAGATGTGCGCCTTGGCGCT
ATGCAAACCATCTTAGAAATGCAGGCTCACAATTGGCCGATTAACTTATCGGTGAATGTGTCGACCTTTGAGTTTTGGTC
CCATGAACTGCAAGATGCCTTTGTGGATTCCTTCGCCGCGATTACCGAGCAACTTGAGGTAACAGATTTCCCCTACGACA
GGTTAACCCTTGAGATCACTGAGTCTTTGCTGATGAAGCAACATACACATCTTATTGATGTGCTTAATGGTCTGCGGATT
AAGGGGATCAAAATTTCCTTGGATGACTTTGGTACTGGCTACTCGTCCTTGTCCTATTTGGCGAATTTCCCTATCGATCA
AATTAAGATTGATAAGAGCTTTATCGACCGATTAGATGAAGGCAAGCGTCACGAAGCGTTGGTGGAGGCCATAGTGCGGT
TAAGCCATGCGTTAGATTTAACCGTGACGGCAGAAGGGGTGGAAACTGAGTCACAACTCAAGTTTGTGATGTCGAATCAT
ATTCAAGAAATTCAAGGCTATCTTTTCTATAAACCTATGCCTAAAGCCGCCTTCTTTGCGCTGTTGGCAAAGCAAGCTGA
GCTGCATTAG

Upstream 100 bases:

>100_bases
TTTACTTAGTTAACATTAGTGCCTAGAATTTCCTATAAGTTATAAATATTTTAACATTGTGAATGTGTATTTATATTGCA
ACTTTGTTTCTAAGGGAATT

Downstream 100 bases:

>100_bases
GGTCTTGACATTGGACCTTGATGTTTGACCTAGATGTGAGGGCGGCTTAATCAGCGACAGTTTGATTAAGATATCGGGTT
TAGATGTAAGGTTAGAATCA

Product: diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 749; Mature: 748

Protein sequence:

>749_residues
MAYGVNLPDLLDHTDVKLAHNVSIACYSSVLSMLLNGAPLHEILHALVLKIETQKIGTRGSILLLSGDGKRLLLGAAPHL
PDSYNQAINGVEIGPNVGSCGTAAYFAKRVIVEDIATHPYWENYKELPLRAGLKSCWSEPIKDTQGKVLGTFAMYYDTIK
SPTELDLELISEAARLASLAIERSRAMEFQRLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKMFL
SASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVTTFREPNGLQPCFAWLFSDISERKKAAQLIKYQANNDSL
TGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEFALL
LPGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQM
QLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQHDGQFIPPDEFIPIAENSGLIVDIGRDVRLGA
MQTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAAITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRI
KGIKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNH
IQEIQGYLFYKPMPKAAFFALLAKQAELH

Sequences:

>Translated_749_residues
MAYGVNLPDLLDHTDVKLAHNVSIACYSSVLSMLLNGAPLHEILHALVLKIETQKIGTRGSILLLSGDGKRLLLGAAPHL
PDSYNQAINGVEIGPNVGSCGTAAYFAKRVIVEDIATHPYWENYKELPLRAGLKSCWSEPIKDTQGKVLGTFAMYYDTIK
SPTELDLELISEAARLASLAIERSRAMEFQRLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKMFL
SASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVTTFREPNGLQPCFAWLFSDISERKKAAQLIKYQANNDSL
TGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEFALL
LPGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQM
QLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQHDGQFIPPDEFIPIAENSGLIVDIGRDVRLGA
MQTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAAITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRI
KGIKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNH
IQEIQGYLFYKPMPKAAFFALLAKQAELH
>Mature_748_residues
AYGVNLPDLLDHTDVKLAHNVSIACYSSVLSMLLNGAPLHEILHALVLKIETQKIGTRGSILLLSGDGKRLLLGAAPHLP
DSYNQAINGVEIGPNVGSCGTAAYFAKRVIVEDIATHPYWENYKELPLRAGLKSCWSEPIKDTQGKVLGTFAMYYDTIKS
PTELDLELISEAARLASLAIERSRAMEFQRLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKMFLS
ASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVTTFREPNGLQPCFAWLFSDISERKKAAQLIKYQANNDSLT
GLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQVNDTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEFALLL
PGIVNQKELAQLAETINKHVAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQMQ
LNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQHDGQFIPPDEFIPIAENSGLIVDIGRDVRLGAM
QTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAAITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRIK
GIKISLDDFGTGYSSLSYLANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNHI
QEIQGYLFYKPMPKAAFFALLAKQAELH

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=442, Percent_Identity=38.4615384615385, Blast_Score=269, Evalue=5e-73,
Organism=Escherichia coli, GI87081921, Length=437, Percent_Identity=35.6979405034325, Blast_Score=223, Evalue=4e-59,
Organism=Escherichia coli, GI226510982, Length=435, Percent_Identity=28.0459770114943, Blast_Score=163, Evalue=5e-41,
Organism=Escherichia coli, GI87081845, Length=243, Percent_Identity=36.6255144032922, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI1786507, Length=255, Percent_Identity=35.6862745098039, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=33.0677290836653, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=33.8461538461538, Blast_Score=130, Evalue=4e-31,
Organism=Escherichia coli, GI87081743, Length=277, Percent_Identity=33.9350180505415, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1788502, Length=266, Percent_Identity=30.8270676691729, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1787055, Length=270, Percent_Identity=29.6296296296296, Blast_Score=103, Evalue=5e-23,
Organism=Escherichia coli, GI1788381, Length=214, Percent_Identity=33.1775700934579, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=35.0282485875706, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI1788849, Length=355, Percent_Identity=28.7323943661972, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI87082096, Length=437, Percent_Identity=25.4004576659039, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87082007, Length=165, Percent_Identity=36.969696969697, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=36.3636363636364, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=34.3373493975904, Blast_Score=91, Evalue=4e-19,
Organism=Escherichia coli, GI1787802, Length=166, Percent_Identity=34.9397590361446, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=35.672514619883, Blast_Score=90, Evalue=6e-19,
Organism=Escherichia coli, GI1788956, Length=161, Percent_Identity=34.7826086956522, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=176, Percent_Identity=32.9545454545455, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=27.7173913043478, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1787410, Length=136, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=170, Percent_Identity=30, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081974, Length=163, Percent_Identity=30.0613496932515, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 83828; Mature: 83697

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00237 G_PROTEIN_RECEP_F1_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYGVNLPDLLDHTDVKLAHNVSIACYSSVLSMLLNGAPLHEILHALVLKIETQKIGTRG
CCCCCCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
SILLLSGDGKRLLLGAAPHLPDSYNQAINGVEIGPNVGSCGTAAYFAKRVIVEDIATHPY
CEEEEECCCCEEEEECCCCCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
WENYKELPLRAGLKSCWSEPIKDTQGKVLGTFAMYYDTIKSPTELDLELISEAARLASLA
CCCHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IERSRAMEFQRLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKMFL
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCEEEEECCCCCCCCCCCCCEEE
SASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVTTFREPNGLQPCFAWLFSD
ECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEHHHCCCCCCCCHHHHHHHHH
ISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQVN
HHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCC
DTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKH
CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHH
VAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQM
HHHHEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEHHHH
QLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQHDGQFIPPDEFI
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEHEEECCCCCCCCCCCCE
PIAENSGLIVDIGRDVRLGAMQTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAA
EEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHH
ITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRIKGIKISLDDFGTGYSSLSYL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH
ANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNH
HCCCHHHEEECHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHH
IQEIQGYLFYKPMPKAAFFALLAKQAELH
HHHHCCEEEECCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AYGVNLPDLLDHTDVKLAHNVSIACYSSVLSMLLNGAPLHEILHALVLKIETQKIGTRG
CCCCCCHHHHCCCCCCHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC
SILLLSGDGKRLLLGAAPHLPDSYNQAINGVEIGPNVGSCGTAAYFAKRVIVEDIATHPY
CEEEEECCCCEEEEECCCCCCCHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCC
WENYKELPLRAGLKSCWSEPIKDTQGKVLGTFAMYYDTIKSPTELDLELISEAARLASLA
CCCHHHCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IERSRAMEFQRLAVKIFDRLPLALVISNSDDSVLYANPAFKHIVLPQDIDIANFNPKMFL
HHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEECCCEEEEECCCCCCCCCCCCCEEE
SASQPNELVGLFEHLAQDKMWQGELVGLRGNGEEFYLDLIVTTFREPNGLQPCFAWLFSD
ECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEHHHCCCCCCCCHHHHHHHHH
ISERKKAAQLIKYQANNDSLTGLANRNALFKLIQSLITSDSLTPGFSFMLMDLDNFKQVN
HHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCC
DTHGHDKGDALLVQVVRQICECLNDTMVFARLGGDEFALLLPGIVNQKELAQLAETINKH
CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHH
VAKRYVLADGKGVYSSVSIGIARFPEDALDLEQLLNCADQAMYISKANGRNRYHFFTEQM
HHHHEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCCEEEEHHHH
QLNAERIASLHNQLKQALDQQTFELYYQPIVNATTGLIVRAEVLLRWQHDGQFIPPDEFI
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEHEEECCCCCCCCCCCCE
PIAENSGLIVDIGRDVRLGAMQTILEMQAHNWPINLSVNVSTFEFWSHELQDAFVDSFAA
EEECCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHH
ITEQLEVTDFPYDRLTLEITESLLMKQHTHLIDVLNGLRIKGIKISLDDFGTGYSSLSYL
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHH
ANFPIDQIKIDKSFIDRLDEGKRHEALVEAIVRLSHALDLTVTAEGVETESQLKFVMSNH
HCCCHHHEEECHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHH
IQEIQGYLFYKPMPKAAFFALLAKQAELH
HHHHCCEEEECCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]