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The map label for this gene is xerD [H]

Identifier: 126174312

GI number: 126174312

Start: 2427263

End: 2428483

Strand: Reverse

Name: xerD [H]

Synonym: Sbal_2092

Alternate gene names: 126174312

Gene position: 2428483-2427263 (Counterclockwise)

Preceding gene: 126174319

Following gene: 126174309

Centisome position: 47.36

GC content: 42.51

Gene sequence:

>1221_bases
ATGTCTAAAATGATCCGGACAAATAGTAATGCTCAAAATAACGCCAATATATCGAATGAAAGAGCGACTGGCTCAGATCA
TCACCATAATAACCGTGCTGAACAGCCACGTTTTTTTGAAGAGTCTTTCCTACCACAATCTGTTCGAAGTGATTATTTAA
GCGCCGCCGAAGAAACTGAATACGAAATTTCAGTGAACACTCGCCGTGTTTATAATACGAGCTTTAGTGTATTCAGCCGT
TATTGTGCCGAGCACCAACTTCAGGCCCTGCCCGCAGATCCACGAAGTGTCATTTCATTTATTGGTCATCAAAAAGAATT
GATCCAAGAAAGCACTGGCGTTCAACTTTCTAAGCAAACATTAACCACAAGGTTGGCAGCAATTCGTTACCATCATATTC
AAGCGGGATTTCACTCGCCAACCGAACATCCTCTGGTGATCAGAGTAATGCGCGGATTGAGCAGAAATCAATCTCGCCAT
GTGAGTGACTATGATCAACAACCCATTATGTATGATGAAGTGGAAATGTTGATCCAAGCTATCGATGAGCAAGTACAGCC
ATTAACCCGAGCGCGGGACAAAGCGATTATTCAATTAGGATTACAAGGTGGGTTTCGTCGTTCTGAACTGGCAGATATAA
AAGTTCAGTATGTCAGTTTTCTGCGTAACAAATTAAAAGTGCGCCTGCCCTATTCGAAGAGTAATCAGCAAGGCCAACGG
GAATGGAAAGACCTGCCAGACCATGAACCCTTTGCAGCACTCGACGCCGTGAAAAATTGGTTATCGTTAGCCAATATTGA
AGACGGACATTTATTTAGATCGCTTTCCCGTGATGGAAAAAATTTACGTCCGTATCAAATGAAAAACCGACATTCAGGTT
CTAGTTCATTACTGAATAAGAATAGTGGTTTCCTTACTGGCGATGATATTTATCGCATCATTAAAAAATATTGTACTAAA
GCAGGACTGCCCGCTAAATTTTATGGTGCCCACAGTTTGCGCAGTGGCTGCGGTGTTTTTCAAGATAGTTGTCACTCTTT
GTTTAAAAATCAAGCTGCATTTATTACGCCTTCTACTGGTGCCTTATCTGGGTTGAGTGTTACAGCGCCAACCGCTTCAC
AATTTCTAATCTCAGTAGACCAACGCATCGGTTTTCTTTCCTTCGCTGCCTCAAGCACTTTCTTGCGCTTGGCTAAAATA
GCGCCATCTTGCAGTGCATGA

Upstream 100 bases:

>100_bases
AATGTATCAGATCAACCGGCCATTCTAATTGTCGCTGAACCGGTCAGGGTAATTGTCGCGCAATAGCCTTCTTAATTCGA
TATCAGGTGACTTCAACGGC

Downstream 100 bases:

>100_bases
CGTTGCCCTGGTGAGACAAAATTTAGCTGGCTGTGTTTATGCTCATCGTTGTACCAGCTTACAAACTTTTCCACCCATTC
TCTTGCTGTTGCTAAGCAGC

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MSKMIRTNSNAQNNANISNERATGSDHHHNNRAEQPRFFEESFLPQSVRSDYLSAAEETEYEISVNTRRVYNTSFSVFSR
YCAEHQLQALPADPRSVISFIGHQKELIQESTGVQLSKQTLTTRLAAIRYHHIQAGFHSPTEHPLVIRVMRGLSRNQSRH
VSDYDQQPIMYDEVEMLIQAIDEQVQPLTRARDKAIIQLGLQGGFRRSELADIKVQYVSFLRNKLKVRLPYSKSNQQGQR
EWKDLPDHEPFAALDAVKNWLSLANIEDGHLFRSLSRDGKNLRPYQMKNRHSGSSSLLNKNSGFLTGDDIYRIIKKYCTK
AGLPAKFYGAHSLRSGCGVFQDSCHSLFKNQAAFITPSTGALSGLSVTAPTASQFLISVDQRIGFLSFAASSTFLRLAKI
APSCSA

Sequences:

>Translated_406_residues
MSKMIRTNSNAQNNANISNERATGSDHHHNNRAEQPRFFEESFLPQSVRSDYLSAAEETEYEISVNTRRVYNTSFSVFSR
YCAEHQLQALPADPRSVISFIGHQKELIQESTGVQLSKQTLTTRLAAIRYHHIQAGFHSPTEHPLVIRVMRGLSRNQSRH
VSDYDQQPIMYDEVEMLIQAIDEQVQPLTRARDKAIIQLGLQGGFRRSELADIKVQYVSFLRNKLKVRLPYSKSNQQGQR
EWKDLPDHEPFAALDAVKNWLSLANIEDGHLFRSLSRDGKNLRPYQMKNRHSGSSSLLNKNSGFLTGDDIYRIIKKYCTK
AGLPAKFYGAHSLRSGCGVFQDSCHSLFKNQAAFITPSTGALSGLSVTAPTASQFLISVDQRIGFLSFAASSTFLRLAKI
APSCSA
>Mature_405_residues
SKMIRTNSNAQNNANISNERATGSDHHHNNRAEQPRFFEESFLPQSVRSDYLSAAEETEYEISVNTRRVYNTSFSVFSRY
CAEHQLQALPADPRSVISFIGHQKELIQESTGVQLSKQTLTTRLAAIRYHHIQAGFHSPTEHPLVIRVMRGLSRNQSRHV
SDYDQQPIMYDEVEMLIQAIDEQVQPLTRARDKAIIQLGLQGGFRRSELADIKVQYVSFLRNKLKVRLPYSKSNQQGQRE
WKDLPDHEPFAALDAVKNWLSLANIEDGHLFRSLSRDGKNLRPYQMKNRHSGSSSLLNKNSGFLTGDDIYRIIKKYCTKA
GLPAKFYGAHSLRSGCGVFQDSCHSLFKNQAAFITPSTGALSGLSVTAPTASQFLISVDQRIGFLSFAASSTFLRLAKIA
PSCSA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45700; Mature: 45569

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKMIRTNSNAQNNANISNERATGSDHHHNNRAEQPRFFEESFLPQSVRSDYLSAAEETE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCC
YEISVNTRRVYNTSFSVFSRYCAEHQLQALPADPRSVISFIGHQKELIQESTGVQLSKQT
EEEEECCEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCEEHHHH
LTTRLAAIRYHHIQAGFHSPTEHPLVIRVMRGLSRNQSRHVSDYDQQPIMYDEVEMLIQA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
IDEQVQPLTRARDKAIIQLGLQGGFRRSELADIKVQYVSFLRNKLKVRLPYSKSNQQGQR
HHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHH
EWKDLPDHEPFAALDAVKNWLSLANIEDGHLFRSLSRDGKNLRPYQMKNRHSGSSSLLNK
HHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHCCCCCCCHHHHCC
NSGFLTGDDIYRIIKKYCTKAGLPAKFYGAHSLRSGCGVFQDSCHSLFKNQAAFITPSTG
CCCCCCHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHCCHHHHHHHHHHCCCCEEECCCCC
ALSGLSVTAPTASQFLISVDQRIGFLSFAASSTFLRLAKIAPSCSA
CCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SKMIRTNSNAQNNANISNERATGSDHHHNNRAEQPRFFEESFLPQSVRSDYLSAAEETE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHCCC
YEISVNTRRVYNTSFSVFSRYCAEHQLQALPADPRSVISFIGHQKELIQESTGVQLSKQT
EEEEECCEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHCCCEEHHHH
LTTRLAAIRYHHIQAGFHSPTEHPLVIRVMRGLSRNQSRHVSDYDQQPIMYDEVEMLIQA
HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
IDEQVQPLTRARDKAIIQLGLQGGFRRSELADIKVQYVSFLRNKLKVRLPYSKSNQQGQR
HHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHH
EWKDLPDHEPFAALDAVKNWLSLANIEDGHLFRSLSRDGKNLRPYQMKNRHSGSSSLLNK
HHHCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHCCCCCCCHHHHCC
NSGFLTGDDIYRIIKKYCTKAGLPAKFYGAHSLRSGCGVFQDSCHSLFKNQAAFITPSTG
CCCCCCHHHHHHHHHHHHHHCCCCHHHHCHHHHHHHCCHHHHHHHHHHCCCCEEECCCCC
ALSGLSVTAPTASQFLISVDQRIGFLSFAASSTFLRLAKIAPSCSA
CCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11073919 [H]