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The map label for this gene is yjiR [H]

Identifier: 126174161

GI number: 126174161

Start: 2250396

End: 2251679

Strand: Reverse

Name: yjiR [H]

Synonym: Sbal_1936

Alternate gene names: 126174161

Gene position: 2251679-2250396 (Counterclockwise)

Preceding gene: 126174168

Following gene: 126174155

Centisome position: 43.91

GC content: 42.76

Gene sequence:

>1284_bases
ATGTACATCTATCAATCATTGGCTAAGTCGATCTCGGATGCAATTTACAAAGGTCAATTACCTCAAGGGGCAAAACTGCC
ATCTATTCGTTATTTCTCCAGCCAACACAATGTGAGTATCAATTCCGTAAAAATGGCCTATCGGCAACTGGAAGATCGTG
GGTTTATTTATGCAAGACCACAAGCAGGCTACTTTGTCGCAAGTCGTATTCCTGCACTAACCCAAAGTAAACCTATCGAA
AACCATCAAAGCTTGAACGTTCCGCATTCAAATATTGAACGTATGCTGTCCACCATCCTTGAATATCAACACAGTGATGG
ATACATCGATTTGGCTTTGGCATGTCCCGAAGGTGAACGCTTCTATCCATCAGCTCGTTTAAGAAAATTGACAGCACAAA
CACTGCGCAATTTAAGACACACTCAAAGTCAATACGCTTTACCGCCAGGGTCCCATCGTCTGAGATCACAAATCGCCAGA
CGAGGCTTATCTTTAGGGATGGTTCTGTCAGCCAAAGATATTCTGATTACTCATGGTGCGATGGAAGCATTAACGCTCGC
TGTTAGAGCGACAACTCAAGTGGGAGACCGTGTTGCCATAGAGACCCCCACATTCTACAACCTCTATCCAATGCTTGATG
AGCTTAATAGAGAGATTGTTCACATCCCTACTCATCCTGATACGGGAATGTGCTTGAAATCCCTAAAAACAGAAATTGAA
AATAAACCCATCAAGGCTGTGATTACTGTACCTAGTGGACACAACCCATTAGGTTTTACTATGCCTTCGACCTATAGAGA
GGAACTGGTTGAGCTTGCCCATTCGCAACATTTTGCCATCATCGAGGATGCAATTTACGCAGAATTACAATATGACGATC
ATCTTATCCCGAACATGAAAGCATTTGACCGTGATGGCTGGGTAATTACCTGTGGGAGTTTTACCAAAACTATCGCACCT
GATTTTCGAATTGGTTGGATGGAGGCTGGTCGATTTAAAGACAAAATTCGACAATTAAAATTTACTTCCACAGTATCCGA
ATCGGTTCTGCTTACTGAGACGTTAGGATTGTTTCTTGAAAATGGCAGCTATGACCTACATATGCGGTACCTTAAACGAC
TTTATCACGCACAAATAGAAACCGTCAGAGCATGTATTGCTGAACACTTTCCAGCAGGAACTCGCGTTAGCCTCCCCCAG
TGCGGATTTATCTTATGGATAGAACTACCTGAATACTTTGATAGCCTGACATTCTTCCACAGAGCATTTGTAGTGGTCAA
GTAA

Upstream 100 bases:

>100_bases
ACAATTAAATATAATAAACTCATCACAACACAAAATTGACAACGTTTAATAGGGGTGAGTAGACTGATTTAACTGTGCCC
ACTGAATTTTTATTATTACC

Downstream 100 bases:

>100_bases
AATTGGCCACGGTTTTAGAGTCATTCCAATATAAACGTTCTGACTCATTTGGCGTTAACCCACCATTATATTGATGGGGT
CTGGTCTCACTGTAATATCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MYIYQSLAKSISDAIYKGQLPQGAKLPSIRYFSSQHNVSINSVKMAYRQLEDRGFIYARPQAGYFVASRIPALTQSKPIE
NHQSLNVPHSNIERMLSTILEYQHSDGYIDLALACPEGERFYPSARLRKLTAQTLRNLRHTQSQYALPPGSHRLRSQIAR
RGLSLGMVLSAKDILITHGAMEALTLAVRATTQVGDRVAIETPTFYNLYPMLDELNREIVHIPTHPDTGMCLKSLKTEIE
NKPIKAVITVPSGHNPLGFTMPSTYREELVELAHSQHFAIIEDAIYAELQYDDHLIPNMKAFDRDGWVITCGSFTKTIAP
DFRIGWMEAGRFKDKIRQLKFTSTVSESVLLTETLGLFLENGSYDLHMRYLKRLYHAQIETVRACIAEHFPAGTRVSLPQ
CGFILWIELPEYFDSLTFFHRAFVVVK

Sequences:

>Translated_427_residues
MYIYQSLAKSISDAIYKGQLPQGAKLPSIRYFSSQHNVSINSVKMAYRQLEDRGFIYARPQAGYFVASRIPALTQSKPIE
NHQSLNVPHSNIERMLSTILEYQHSDGYIDLALACPEGERFYPSARLRKLTAQTLRNLRHTQSQYALPPGSHRLRSQIAR
RGLSLGMVLSAKDILITHGAMEALTLAVRATTQVGDRVAIETPTFYNLYPMLDELNREIVHIPTHPDTGMCLKSLKTEIE
NKPIKAVITVPSGHNPLGFTMPSTYREELVELAHSQHFAIIEDAIYAELQYDDHLIPNMKAFDRDGWVITCGSFTKTIAP
DFRIGWMEAGRFKDKIRQLKFTSTVSESVLLTETLGLFLENGSYDLHMRYLKRLYHAQIETVRACIAEHFPAGTRVSLPQ
CGFILWIELPEYFDSLTFFHRAFVVVK
>Mature_427_residues
MYIYQSLAKSISDAIYKGQLPQGAKLPSIRYFSSQHNVSINSVKMAYRQLEDRGFIYARPQAGYFVASRIPALTQSKPIE
NHQSLNVPHSNIERMLSTILEYQHSDGYIDLALACPEGERFYPSARLRKLTAQTLRNLRHTQSQYALPPGSHRLRSQIAR
RGLSLGMVLSAKDILITHGAMEALTLAVRATTQVGDRVAIETPTFYNLYPMLDELNREIVHIPTHPDTGMCLKSLKTEIE
NKPIKAVITVPSGHNPLGFTMPSTYREELVELAHSQHFAIIEDAIYAELQYDDHLIPNMKAFDRDGWVITCGSFTKTIAP
DFRIGWMEAGRFKDKIRQLKFTSTVSESVLLTETLGLFLENGSYDLHMRYLKRLYHAQIETVRACIAEHFPAGTRVSLPQ
CGFILWIELPEYFDSLTFFHRAFVVVK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=307, Percent_Identity=24.7557003257329, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI33469970, Length=307, Percent_Identity=24.7557003257329, Blast_Score=88, Evalue=2e-17,
Organism=Escherichia coli, GI1790797, Length=421, Percent_Identity=34.6793349168646, Blast_Score=254, Evalue=7e-69,
Organism=Escherichia coli, GI1787710, Length=417, Percent_Identity=32.3741007194245, Blast_Score=230, Evalue=2e-61,
Organism=Caenorhabditis elegans, GI17567663, Length=196, Percent_Identity=28.0612244897959, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21356535, Length=320, Percent_Identity=21.875, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 48556; Mature: 48556

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIYQSLAKSISDAIYKGQLPQGAKLPSIRYFSSQHNVSINSVKMAYRQLEDRGFIYARP
CCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEECC
QAGYFVASRIPALTQSKPIENHQSLNVPHSNIERMLSTILEYQHSDGYIDLALACPEGER
CCCEEHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
FYPSARLRKLTAQTLRNLRHTQSQYALPPGSHRLRSQIARRGLSLGMVLSAKDILITHGA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEECCH
MEALTLAVRATTQVGDRVAIETPTFYNLYPMLDELNREIVHIPTHPDTGMCLKSLKTEIE
HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC
NKPIKAVITVPSGHNPLGFTMPSTYREELVELAHSQHFAIIEDAIYAELQYDDHLIPNMK
CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHEEEECCCCCCCCCH
AFDRDGWVITCGSFTKTIAPDFRIGWMEAGRFKDKIRQLKFTSTVSESVLLTETLGLFLE
HCCCCCCEEEECCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
NGSYDLHMRYLKRLYHAQIETVRACIAEHFPAGTRVSLPQCGFILWIELPEYFDSLTFFH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECHHHHHHHHHHH
RAFVVVK
HEEEEEC
>Mature Secondary Structure
MYIYQSLAKSISDAIYKGQLPQGAKLPSIRYFSSQHNVSINSVKMAYRQLEDRGFIYARP
CCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEECC
QAGYFVASRIPALTQSKPIENHQSLNVPHSNIERMLSTILEYQHSDGYIDLALACPEGER
CCCEEHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
FYPSARLRKLTAQTLRNLRHTQSQYALPPGSHRLRSQIARRGLSLGMVLSAKDILITHGA
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEECCH
MEALTLAVRATTQVGDRVAIETPTFYNLYPMLDELNREIVHIPTHPDTGMCLKSLKTEIE
HHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHC
NKPIKAVITVPSGHNPLGFTMPSTYREELVELAHSQHFAIIEDAIYAELQYDDHLIPNMK
CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEHHHHHEEEECCCCCCCCCH
AFDRDGWVITCGSFTKTIAPDFRIGWMEAGRFKDKIRQLKFTSTVSESVLLTETLGLFLE
HCCCCCCEEEECCCHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
NGSYDLHMRYLKRLYHAQIETVRACIAEHFPAGTRVSLPQCGFILWIELPEYFDSLTFFH
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECHHHHHHHHHHH
RAFVVVK
HEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]