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The map label for this gene is ycbB [H]

Identifier: 126174124

GI number: 126174124

Start: 2201430

End: 2202995

Strand: Direct

Name: ycbB [H]

Synonym: Sbal_1898

Alternate gene names: 126174124

Gene position: 2201430-2202995 (Clockwise)

Preceding gene: 126174123

Following gene: 126174125

Centisome position: 42.93

GC content: 46.68

Gene sequence:

>1566_bases
ATGGTATTGCACAAGATCATCCAGTATTTCTCACCGTTTGTATGCGCATCGCAAATTAAACGTATGCCCATGAGTCGCTG
TTTGGGACTGTTAGTGCTGAGCGTTATTGTCTGCTTTCCTATCACGTCAGTGGCAATGGCTACCGATGATACTCAAGCCA
TTTCATCGAATCCCAGCATTGGTGCACAGCAAGACATGCTGCAGCTAAACAGTGTGCAACCAAGCACTGAGAGTAAAGTC
GATGAGCCCGATGCAGCCTTGCCACTTACGGCATTAGTGCCGCAGGTGTTGCTGCTGGATCTTGCGGGCGTTAATCCTAT
TTTTGGTCTGCATTATCGTGAATTAACACTATCACCAAATACCTTATCAGCGGCCGATATGGCGCGGGTTCAAGCTGATG
TGACGGGCTACTGGCGTTATATCAAGACCTTTGCGCAGTGTAACAACGGCGCTCCCGTAGACACAGTGTCAGCCGTTATT
CCAACGGATCTTCACTATCAAAGGGTGCTAAAACAAGTCGCCCATTTAGTGCAACTGGATGCGACTGAACCTTGGGAAAC
TTTAGTGCTGGATGAAAAGTTAACGGTCGGAATGAGTCATCCATTCGTTGATACTATAGCTAAACGTTTGTGGCTTTTGG
GTGACTTAGCCATTGAGCCAACGACGAACCTTGTCTATAGCGAAGAATTGGTGGTCGGTGTTAAGCGTTTCCAACAAAGG
CATGGGTTAAAACAGGACGGGGTGATTGGTAAGCAGACCTTGTATTGGCTGAATCAATCGCCAAAGGCGAGGGCAGTCTT
ACTGGCTAAAAATACTATTCGGCAACGAGTGTTTGAACGTAAGTTGGAGCCAAGCTACTTGCTGATTAACGTGCCCGCCT
TTGAGATGATCTTAGTCGATAATGGCACCACAGTGCTCAATTCCAAAGTGATTGTGGGTAAATCTTCTCGGCAAACCCCG
CTGCTGGATAGCCAGATTTCCAGCGTGGTCCTCAATCCCAGTTGGCGAGTGCCGAGCAGCATTCTACGCCGAGATATCCT
GCCGCAGATTCGGCGAAATGGTCATTATCTTAATGAACGCCAATTTGATGTGTACGACTATAACGGCCAACTAGTGCAAC
ATATGCCAGAAGAATGGCAGGACTTAGCCAGCACTTCGTTTCCCTATCAGCTAGTGCAACGCCCAGGGGCGAAGAATGCA
TTAGGCAAATATAAGTTTCACTTTGATAACAGTTTCAGTGTCTATTTACATGGCACTTCTGAGCCAAGTCTCTTTAATAA
GGACGATAGGGCACTATCATCAGGCTGTATTCGGATTGAAAAAGTCACTGAATTAGCCCAGTGGTTTAAAGAACATTTAG
TTAAAGATAAGCGTTTATGGGACAAATTAGTCCCAGATGTAACGGAGCCGCAGTGGTTTTCACTTTCTCAAAAGCTGCCA
GTGCATCTGGTGTATTGGACTGCATGGCTGGATGACAGTGGGCAAGAGCAATACCGTAGCGACATTTACCATTTAGAAGC
TGAGTTGACGAATGCCGTACCCGCCACGGTTTTAGATCTCAATTAA

Upstream 100 bases:

>100_bases
CTAGTAATTAACTGATCCCCATGAAATAGTCGTATGACAGTATTATTGACTGACATGATCGCTGGCTTTCAAGTGACCTT
AAATAGCGAAGGGAGTATTT

Downstream 100 bases:

>100_bases
GATTTTGGCGCTATAACGCTGAGTATGATAACAAATTGAACTCGCAGGGCATTTTAAAATCGTGGGCAGAATAGGGTGGG
CAAAACTTGATCTTAGGGCT

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 521; Mature: 521

Protein sequence:

>521_residues
MVLHKIIQYFSPFVCASQIKRMPMSRCLGLLVLSVIVCFPITSVAMATDDTQAISSNPSIGAQQDMLQLNSVQPSTESKV
DEPDAALPLTALVPQVLLLDLAGVNPIFGLHYRELTLSPNTLSAADMARVQADVTGYWRYIKTFAQCNNGAPVDTVSAVI
PTDLHYQRVLKQVAHLVQLDATEPWETLVLDEKLTVGMSHPFVDTIAKRLWLLGDLAIEPTTNLVYSEELVVGVKRFQQR
HGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVFERKLEPSYLLINVPAFEMILVDNGTTVLNSKVIVGKSSRQTP
LLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNERQFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNA
LGKYKFHFDNSFSVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLVPDVTEPQWFSLSQKLP
VHLVYWTAWLDDSGQEQYRSDIYHLEAELTNAVPATVLDLN

Sequences:

>Translated_521_residues
MVLHKIIQYFSPFVCASQIKRMPMSRCLGLLVLSVIVCFPITSVAMATDDTQAISSNPSIGAQQDMLQLNSVQPSTESKV
DEPDAALPLTALVPQVLLLDLAGVNPIFGLHYRELTLSPNTLSAADMARVQADVTGYWRYIKTFAQCNNGAPVDTVSAVI
PTDLHYQRVLKQVAHLVQLDATEPWETLVLDEKLTVGMSHPFVDTIAKRLWLLGDLAIEPTTNLVYSEELVVGVKRFQQR
HGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVFERKLEPSYLLINVPAFEMILVDNGTTVLNSKVIVGKSSRQTP
LLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNERQFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNA
LGKYKFHFDNSFSVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLVPDVTEPQWFSLSQKLP
VHLVYWTAWLDDSGQEQYRSDIYHLEAELTNAVPATVLDLN
>Mature_521_residues
MVLHKIIQYFSPFVCASQIKRMPMSRCLGLLVLSVIVCFPITSVAMATDDTQAISSNPSIGAQQDMLQLNSVQPSTESKV
DEPDAALPLTALVPQVLLLDLAGVNPIFGLHYRELTLSPNTLSAADMARVQADVTGYWRYIKTFAQCNNGAPVDTVSAVI
PTDLHYQRVLKQVAHLVQLDATEPWETLVLDEKLTVGMSHPFVDTIAKRLWLLGDLAIEPTTNLVYSEELVVGVKRFQQR
HGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVFERKLEPSYLLINVPAFEMILVDNGTTVLNSKVIVGKSSRQTP
LLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNERQFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNA
LGKYKFHFDNSFSVYLHGTSEPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLVPDVTEPQWFSLSQKLP
VHLVYWTAWLDDSGQEQYRSDIYHLEAELTNAVPATVLDLN

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=290, Percent_Identity=38.6206896551724, Blast_Score=221, Evalue=8e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 58920; Mature: 58920

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLHKIIQYFSPFVCASQIKRMPMSRCLGLLVLSVIVCFPITSVAMATDDTQAISSNPSI
CHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHCCCCCC
GAQQDMLQLNSVQPSTESKVDEPDAALPLTALVPQVLLLDLAGVNPIFGLHYRELTLSPN
CCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC
TLSAADMARVQADVTGYWRYIKTFAQCNNGAPVDTVSAVIPTDLHYQRVLKQVAHLVQLD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCC
ATEPWETLVLDEKLTVGMSHPFVDTIAKRLWLLGDLAIEPTTNLVYSEELVVGVKRFQQR
CCCCHHHEEECCHHEECCCCCHHHHHHHHHHHHHCEEECCCCCEEEHHHHHHHHHHHHHH
HGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVFERKLEPSYLLINVPAFEMILVD
CCCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEE
NGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNER
CCCEEEECEEEEECCCCCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
QFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNALGKYKFHFDNSFSVYLHGTS
CEEEEECCCHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEEECCC
EPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLVPDVTEPQWFSLSQKLP
CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCC
VHLVYWTAWLDDSGQEQYRSDIYHLEAELTNAVPATVLDLN
EEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure
MVLHKIIQYFSPFVCASQIKRMPMSRCLGLLVLSVIVCFPITSVAMATDDTQAISSNPSI
CHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHCCCCCC
GAQQDMLQLNSVQPSTESKVDEPDAALPLTALVPQVLLLDLAGVNPIFGLHYRELTLSPN
CCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCC
TLSAADMARVQADVTGYWRYIKTFAQCNNGAPVDTVSAVIPTDLHYQRVLKQVAHLVQLD
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCC
ATEPWETLVLDEKLTVGMSHPFVDTIAKRLWLLGDLAIEPTTNLVYSEELVVGVKRFQQR
CCCCHHHEEECCHHEECCCCCHHHHHHHHHHHHHCEEECCCCCEEEHHHHHHHHHHHHHH
HGLKQDGVIGKQTLYWLNQSPKARAVLLAKNTIRQRVFERKLEPSYLLINVPAFEMILVD
CCCCCCCCCCCCEEEEECCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEECCCEEEEEEE
NGTTVLNSKVIVGKSSRQTPLLDSQISSVVLNPSWRVPSSILRRDILPQIRRNGHYLNER
CCCEEEECEEEEECCCCCCCCHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCC
QFDVYDYNGQLVQHMPEEWQDLASTSFPYQLVQRPGAKNALGKYKFHFDNSFSVYLHGTS
CEEEEECCCHHHHHCCHHHHHHHCCCCCHHHHHCCCCCCCCCCEEEEECCCEEEEEECCC
EPSLFNKDDRALSSGCIRIEKVTELAQWFKEHLVKDKRLWDKLVPDVTEPQWFSLSQKLP
CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCC
VHLVYWTAWLDDSGQEQYRSDIYHLEAELTNAVPATVLDLN
EEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]